Gene detail information of Glyur000094s00007856 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19530.1 | 6.00E-125 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | NP_001241620.1 | 0 | uncharacterized protein LOC100801533 [Glycine max] |
| COG | YP_004457998.1 | 1.00E-76 | spermine synthase [Acidianus hospitalis W1] |
| Swissprot | tr|Q9S7X6|ACL5_ARATH | 2.00E-155 | Thermospermine synthase ACAULIS5 |
| trEMBL | tr|C6TIR0|C6TIR0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G28340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00094 | 134522 | 141525 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000094s00007856.1 | PF01564.12 | Spermine_synth | 32 | 269 | 2.20E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.496 |
| SRR1783600 | control | 2.419 |
| SRR1783602 | moderate drought stress | 2.485 |
| SRR1811619 | moderate drought stress | 2.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.888 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.815 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.995 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.983 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.223 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.447 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 906.681 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 904.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.263 |
| SRR2868004 | Drought Stress (root) | 34.126 |
| SRR2967015 | Control (root) | 34.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 367.283 |
| SRR9715740 | Leaf | 439.274 |
| SRR9715741 | Leaf | 335.375 |
| SRR9715739 | Root | 1.745 |
| SRR9715742 | Root | 8.946 |
| SRR9715743 | Root | 7.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.363 |
| SRR8749028 | MeJA induced 9h | 18.142 |
| SRR8749029 | MeJA induced 9h | 15.634 |
| SRR8749030 | Uninduced | 20.697 |
| SRR8749031 | Uninduced | 20.014 |
| SRR8749032 | Uninduced | 33.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.220 |
| SRR8400027 | Control - Root | 26.400 |