Gene detail information of Glyur000094s00007854 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14950.1 | 1.00E-168 | SNARE associated Golgi protein family |
| NR | XP_003610704.1 | 0 | Transmembrane protein [Medicago truncatula] |
| COG | YP_004174596.1 | 1.00E-07 | hypothetical protein ANT_19700 [Anaerolinea thermophila UNI-1] |
| Swissprot | tr|Q5XF36|KMS1_ARATH | 0 | Vacuole membrane protein KMS1 {ECO:0000303|PubMed:21294794} |
| trEMBL | tr|B7FLS1|B7FLS1_MEDTR | 0 | Vacuole membrane-like protein {ECO:0000313|EMBL:AES93662.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00094 | 127674 | 132600 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000094s00007854.1 | PF09335.6 | SNARE_assoc | 201 | 295 | 9.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.715 |
| SRR1783600 | control | 17.763 |
| SRR1783602 | moderate drought stress | 11.950 |
| SRR1811619 | moderate drought stress | 11.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.476 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.736 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.579 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.345 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.155 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.852 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.448 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.535 |
| SRR2868004 | Drought Stress (root) | 33.512 |
| SRR2967015 | Control (root) | 33.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.483 |
| SRR9715740 | Leaf | 22.748 |
| SRR9715741 | Leaf | 22.660 |
| SRR9715739 | Root | 5.246 |
| SRR9715742 | Root | 11.644 |
| SRR9715743 | Root | 11.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.418 |
| SRR8749028 | MeJA induced 9h | 46.302 |
| SRR8749029 | MeJA induced 9h | 45.039 |
| SRR8749030 | Uninduced | 40.673 |
| SRR8749031 | Uninduced | 97.730 |
| SRR8749032 | Uninduced | 64.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.682 |
| SRR8400027 | Control - Root | 30.643 |