Gene detail

Gene detail information of Glyur000094s00007853

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26340.1	0	Major facilitator superfamily protein
NR	XP_004511353.1	0	PREDICTED: sugar transport protein 13-like [Cicer arietinum]
COG	YP_006180545.1	3.00E-64	MFS-type transporter [Halobacillus halophilus DSM 2266]
Swissprot	tr\|Q94AZ2\|STP13_ARATH	0	Sugar transport protein 13
trEMBL	tr\|I1LFT2\|I1LFT2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G00710.1}

Sequence

Transcript Sequence

>Glyur000094s00007853.1
CAACAACTCAACTACTACTCCTTTTATCACATCACTTTCTCATTCCTCCCNTCTTCTTATATATATATCCCCTCTTTCTCTCATATTTTCCCCACCACGATTGCATAGCATTTGCATCTGCGTATACAACTATACATTACCCAAATAGATAGATTCAAAACCTCTCAACTATATATCTGTGTAGCTAGCTAGCTAGCTAGCTAGGTAGGTTAATTAACCATGGCCGGCGGAGGTTTCGCCAACGCTGCCGGAGGCGGCGATTTCGAGGCAAAGATAACTCCCATCGTCATCATTTCATGTATCATGGCTGCCACCGGTGGTCTTATGTTCGGTTACGACGTCGGCGTTTCAGGTGGTGTGACATCGATGCCACCATTTTTGAAGAAGTTTTTTCCGGCGGTGTACAGAAGGACAGTGGAGGAGAAAGAGTTGGACAGCAATTACTGCAAATACGACAACCAAGGACTGCAGCTGTTCACCTCGTCCTTGTACCTTGCTGGCTTAACTGCCACCTTCTTCGCNTCCTACACCACTCGCAGGTTGGGCAGAAGACTCACCATGTTGATCGCTGGCGTCTTCTTCATTGGNGGTGTTGTCTTCAATACTGCTGCCCAAGACCTTGCCATGCTCATCGTTGGCAGAATCTTACTTGGCTGTGGTGTTGGTTTTGCTAACCAGGCCGTGCCGGTGTTCCTTTCTGAAATCGCACCTTCAAGAATACGTGGAGCATTGAATATACTGTTCCAGCTCAATGTCACCATTGGCATCCTATTCGCTAACCTTGTCAACTATGGCACCAACAAAATCAAAGGTGGGTGGGGATGGAGGCTCTCACTGGGGTTGGCGGGTATCCCAGCACTTCTGCTCACAGTGGGTGCTCTCTTGGTGGTTGACACCCCAAACAGNCTCATCGAGCGAGGCCGCTTGGAAGAAGGTAAAGCTGTTCTCAGAAAGATTCGTGGCACCGACAACATTGAGCCTGAGTTCTTGGAGCTTGTCGAGGCAAGTCGTGTCGCTAAAGAGATATTCCAGCAATTGACAGGCATCAACGCGATCATGTTTTATGCGCCAGTGCTGTTCAACACATTGGGGTTCAAGAACGATGCTTCCCTCTACTCTTCCGTGATCACCGGCGCCGTCAACGTCCTCTCCACAATCGTGTCAATCTACTCGGTGGACAAGGTTGGNCGTCGCAAGCTTTTGTTGGAGGCTGGTGTGCAAATGTTCCTGTCGCAGGTTGTCATTGCAATCATCCTCGGCATAAAGGTTACGGACCATTCCGATAACCTTTCAAAAGGTTTTGCCATTCTGGTGGTTGTTATGGTGTGCACCTTCGTGTCTGCTTTTGCTTGGTCTTGGGGTCCTCTCGGGTGGTTGATTCCGAGTGAGACATTCCCATTGGAGACTCGCTCGGCGGGGCAGAGTGTAACCGTTTGTGTCAACTTGCTCTTCACCTTCGTCATTGCNCAGGCCTTCCTCTCCATGTTGTGCCACTTCAAGTTCGGCATCTTCTTGTTCTTCTCTGGATGGGTCTTTATCATGTCTCTGTTCGTGTTCTTCCTTTTACCCGAGACCAAGAACATCCCCATTGAGGAGATGACTGAGAGAGTGTGGAAGCAGCATTGGCTCTGGAAGAGGTTTATTGAGGATGATTATGAGTATGGTACCCATGAGAAAGTTGCAAATTTCAATGACCAGAAGACAAATAATGGATTTGATCCGGCTTCCCAGTTGTAAATTGCTCGNGTTCACTTCTGGCATAATTTCCAATTGTCAAATGAGTATTTTTCATTTTAGGCTCTATTAGAGAACACGCTGAGAAGGGCACTACTAGTACTAGTACTACTATACGACGACTAAGCAAGTTATGTTTATTCTCCCTATGTATGTAATCACACATTAACTATCCTGTTTTGCAAGCCCTGTATGCTATACAGGATTTTCTTTCTTTCTTACCTCCCCCTTCTCCCTCTTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	112443	117759	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007853.1	PF00083.19	Sugar_tr	27	462	5.80E-113

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.705
SRR1783600	control	13.446
SRR1783602	moderate drought stress	12.977
SRR1811619	moderate drought stress	13.081

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.588
DRR006520	Root Summer glycyrrhizin high producing strain	2.460
DRR006521	Root Winter glycyrrhizin high producing strain	2.630
DRR006522	Root Winter glycyrrhizin high producing strain	2.454
DRR006523	Root Summer glycyrrhizin low producing strain	1.789
DRR006524	Root Summer glycyrrhizin low producing strain	1.830
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.964
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.267

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.214
SRR2868004	Drought Stress (root)	73.883
SRR2967015	Control (root)	47.300

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.945
SRR9715740	Leaf	21.951
SRR9715741	Leaf	127.887
SRR9715739	Root	37.456
SRR9715742	Root	20.372
SRR9715743	Root	24.695

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.665
SRR8749028	MeJA induced 9h	231.603
SRR8749029	MeJA induced 9h	227.282
SRR8749030	Uninduced	153.542
SRR8749031	Uninduced	816.255
SRR8749032	Uninduced	773.378

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.533
SRR8400027	Control - Root	31.423