Gene detail

Gene detail information of Glyur000094s00007837

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19260.1	1.00E-20	Protein of unknown function (DUF3049)
NR	XP_004511343.1	2.28E-107	PREDICTED: protein FANTASTIC FOUR 3-like [Cicer arietinum]
Swissprot	tr\|Q6NMR8\|FAF3_ARATH	3.00E-24	Protein FANTASTIC FOUR 3
trEMBL	tr\|G7K296\|G7K296_MEDTR	3.00E-97	Fantastic four-like protein {ECO:0000313\|EMBL:AES93630.1}

Sequence

Transcript Sequence

>Glyur000094s00007837.1
ATGGCTGCAATTGTGTGCCACGGGTTGCAGTCATGCCTAGAGTCCCAGCTCGTTGAGTCAAGAATACACAGTCTTCGGTTNCCTTCTCCAAAACTCACTCCTCAACCCATTGATTTAGCTTTCAAATCCTGTTTTTGGGAATCAAACACCAAACCCCATTGTGAAGAAAACAGTTACAAAACCGACACTGTCTCCTCCAACCCCAACCAGTGTAGTTGGAGCTCCATTCAAGCTCTTTCCAATGCTTCCCAAGGCCCAAAAGAACCCACCTATGTCCCTCCTCAAGTNAAACTTTCGTGGCTGCGACTCAGCCCCAAGAGTTTGGAGCTGTGCACTGAGAATTTAGGGAACGAGACTGGCACTGATATCACGGAGAGTGGCATTGACTTGCTCTCTTCCACAGACAATGCTATTGCTGGCGGAAACTTGGGAGCAGAGGATCAAAGGAAACCATGTCAACTTTTGGGAGCGAAGAAAGAGAAAGAGAAAAGCCAGAATTTTCCACCTCCTTTGACAACGATGAGGGGATCAGAGTCTCTGAGAGTGAGGCCCCACAGAGAAGGTGGGAGGCTAGTAATTGAGGTCACTAAGGTCTCATCTTCATCGAGTTCTAGTGTTTCTTGTTTCNAAGCAGAGAGAAGCCATGGACGCCTTCGTCTTTCCCTTTGGACTGACCCAGAAGAAGAAGAAGAAGATGGTGATAACGAAGACATTGACAACCAAGGGTTTGAAACTGANATGAATGGACACGTGGAGGACGAAGAAGAAGAACAAGAGGCGGAGGAGGAGGTAGGAGAAGAAGGTTCTAATGATGTGACTGAGAATTATGAGCAGAATGATGAGGGTGGTGACGCAGAGACAAAAGGCAACAGTTGGAGTATTATTGGGAGTGAAATGAGAATGGAAAAGTATGAGAGGGTAAGCAGAAGCAGAAGCAGCAGGTGCAAAGAAGGTGGTGGTGACCATCATGAAAACAATGAATTACTATTAGTAAACTGGGGGGAACCTCTTTGGGTGGCAACTTCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00094	33193	34221	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000094s00007837.1	PF11250.3	DUF3049	166	222	2.30E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.168
SRR1783600	control	1.139
SRR1783602	moderate drought stress	0.399
SRR1811619	moderate drought stress	0.359

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.943
DRR006520	Root Summer glycyrrhizin high producing strain	0.939
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.322
DRR006524	Root Summer glycyrrhizin low producing strain	0.195
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.300
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.958

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.221
SRR2868004	Drought Stress (root)	25.745
SRR2967015	Control (root)	16.311

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.704
SRR9715740	Leaf	0.121
SRR9715741	Leaf	0.378
SRR9715739	Root	1.032
SRR9715742	Root	1.316
SRR9715743	Root	1.008

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.930
SRR8400027	Control - Root	9.637