Gene detail information of Glyur000093s00009412 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28150.1 | 8.00E-124 | Domain of unknown function (DUF966) |
| NR | XP_004506071.1 | 0 | PREDICTED: serine-rich adhesin for platelets-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LX14|UFC_ARATH | 7.00E-32 | Protein UPSTREAM OF FLC |
| trEMBL | tr|K7LTP4|K7LTP4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G08610.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00093 | 362035 | 364906 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000093s00009412.1 | PF06136.8 | DUF966 | 33 | 420 | 8.20E-118 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.341 |
| SRR1783600 | control | 1.456 |
| SRR1783602 | moderate drought stress | 1.504 |
| SRR1811619 | moderate drought stress | 1.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.179 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.105 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.005 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.989 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.597 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.118 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.273 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.475 |
| SRR2868004 | Drought Stress (root) | 11.025 |
| SRR2967015 | Control (root) | 12.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.607 |
| SRR9715740 | Leaf | 1.854 |
| SRR9715741 | Leaf | 3.334 |
| SRR9715739 | Root | 0.533 |
| SRR9715742 | Root | 2.026 |
| SRR9715743 | Root | 1.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.802 |
| SRR8749028 | MeJA induced 9h | 4.618 |
| SRR8749029 | MeJA induced 9h | 3.007 |
| SRR8749030 | Uninduced | 1.040 |
| SRR8749031 | Uninduced | 0.487 |
| SRR8749032 | Uninduced | 0.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.008 |
| SRR8400027 | Control - Root | 8.556 |