Gene detail

Gene detail information of Glyur000093s00009409

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G22930.1	1.00E-23	Protein of unknown function (DUF1635)
NR	KHN21073.1	1.92E-116	hypothetical protein glysoja_006552 [Glycine soja]
trEMBL	tr\|I1LR87\|I1LR87_SOYBN	6.00E-116	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G08590.1}

Sequence

Transcript Sequence

>Glyur000093s00009409.1
CACGGAATTAACCTGGTATTATTAGATAGGGTGTAATGTAGAGTGTTGAACATAGGTGACGTAGGATTTGGCCACAGTTATGGCTTTTTCTGTGTTTTGTTTTGTTTAGTTTTTTTTCCTTCCAATTCCCGGGTGAGCAGGGCAACCCACAAGGACCAACAGTAACTTGGACTGGTTCCTTATAAAAGAGCTTCAACCATCCCCCAAACCCCCCCTAACTCTGTCTCTCTCCTTTTCTTCTTTCCCTCTTCTCTTGCTCTTCCCCCATTTCCCTTTCTCTCTTCCATTCTTTCAAAAAGCCAAAAACAAAAACAAAAAAATATATATCAATTGTCATTTTGAGACAGGGAGCGAGCATGGACAATCAACGCAGCCCTCTTCTAAGTTGGGCTTACTACTGCCACGGAAAGTCAATGGAGGAGCTGAAGCAGACCCTCATGTACACTACACTGGAGCTTGAACAGACAAGAGCAGCAGAACTTCTCAACAAAGCCATGAGAGAAAGAGACGAAGCACAAGAGAAATGCCAGAGACTCGTGTTGGAGAAGTTGGTTTTCCAACAACAGAAACAACAACAACAACAGACAGGTCCTGTGTCTGGGATTTCTAGCATTGAAGATGAACCCAGGAGAGGAATTGACTCAAACAATGGGCTTTCATCATCAGATTGTGAAGAGAGCATAGTTTCCTCTCCAGTTATTGACCATATTCATCTGCCACAGCCACCACTACCACTGGCTTCCATGACAGAGCCAATGATTGAGTTGATAGCAACAGATAAACCGTTACCAGAAAAGGGTAAACTTTTACAAGCAGTGATGAAAGCTGGTCCTTTGCTTCAGACCCTTCTACTTGCGGGACCACTTCCTCAATGGAGACACCCACCACCGCCATTGGAGTCCTTTGAGATTCCACCAGTCACCATTCCTTCACCACCGCCACCGCAGCTCCACCACCACCAAGACTCCTTCGTCAACACTAACACTGCCACCACCAACTGCGGAAGAGTCAGTAGAAAAAGGGTCTTCTGTGATGGCTCTGATTCTTCTCCTGCGGCAGAGACCAAGTACCAGAGGATTAACAGAAGCGATCCTGGTTTAACCCAGTGGGAGAAGAGCATGAAGAGAAGAAAAATGCTTGATTTTGGCTTTCTGGATTTATCCTTTGGCATTTCCCCCTATTCACATTCTACTTTTGTTTCGTGTGAAAGGGTCACTGAAATTATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTGATCTATAAGATCACATCAACAGTTAGGAGGATGGGTGATTGGGTGTGTAGTCGTTGGGATTGGGAGGTGGTGTGGCCAACAACCAAGGGACCCACAAATCAGAATCAGGATCTATTGCTGATCCAAGAGAAGGATGTCAGCAACACAAATGTATCAGCAAAAAGGGTAGCCATGTTCTACAACAGTGACAATGTTACGTTGCTTGCTGAAGGAGGTGATAGGGTTCAAGGGCAGGTAAAGAGGAGTCACATGGATAGTCCTCCCCAAAGCAGACAGGTAGATGGGGAGAGTGCATGGCTTTGCTCAAAGATGGACGCGGAGGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00093	346250	349448	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000093s00009409.1	PF07795.6	DUF1635	41	240	7.20E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	97.563
SRR1783600	control	98.451
SRR1783602	moderate drought stress	54.800
SRR1811619	moderate drought stress	55.198

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.514
DRR006520	Root Summer glycyrrhizin high producing strain	59.759
DRR006521	Root Winter glycyrrhizin high producing strain	19.290
DRR006522	Root Winter glycyrrhizin high producing strain	18.715
DRR006523	Root Summer glycyrrhizin low producing strain	92.617
DRR006524	Root Summer glycyrrhizin low producing strain	93.700
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.386
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.604

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.757
SRR2868004	Drought Stress (root)	23.687
SRR2967015	Control (root)	27.622

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.833
SRR9715740	Leaf	8.827
SRR9715741	Leaf	20.039
SRR9715739	Root	11.044
SRR9715742	Root	16.384
SRR9715743	Root	16.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.219
SRR8749028	MeJA induced 9h	18.675
SRR8749029	MeJA induced 9h	14.177
SRR8749030	Uninduced	10.952
SRR8749031	Uninduced	15.428
SRR8749032	Uninduced	4.130

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.960
SRR8400027	Control - Root	68.833