Gene detail information of Glyur000093s00009399 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45010.1 | 4.00E-168 | serine carboxypeptidase-like 48 |
| NR | AFK46969.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_002430787.1 | 1.00E-41 | peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01] |
| Swissprot | tr|Q56WF8|SCP48_ARATH | 0 | Serine carboxypeptidase-like 48 (Precursor) |
| trEMBL | tr|I3T377|I3T377_LOTJA | 0 | Carboxypeptidase {ECO:0000256|RuleBase:RU361156} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00093 | 283382 | 292660 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000093s00009399.1 | PF00450.17 | Peptidase_S10 | 104 | 464 | 1.60E-111 |
| Glyur000093s00009399.1 | PF00450.17 | Peptidase_S10 | 510 | 862 | 1.00E-97 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.679 |
| SRR1783600 | control | 2.684 |
| SRR1783602 | moderate drought stress | 1.497 |
| SRR1811619 | moderate drought stress | 1.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.036 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.735 |
| SRR2868004 | Drought Stress (root) | 8.282 |
| SRR2967015 | Control (root) | 7.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.001 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 2.068 |
| SRR9715742 | Root | 2.111 |
| SRR9715743 | Root | 1.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.457 |
| SRR8749028 | MeJA induced 9h | 0.220 |
| SRR8749029 | MeJA induced 9h | 1.510 |
| SRR8749030 | Uninduced | 0.075 |
| SRR8749031 | Uninduced | 0.242 |
| SRR8749032 | Uninduced | 0.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.634 |
| SRR8400027 | Control - Root | 14.176 |