Gene detail

Gene detail information of Glyur000093s00009394

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05160.1	0	AMP-dependent synthetase and ligase family protein
NR	XP_006591122.1	0	PREDICTED: 4-coumarate--CoA ligase-like 7-like isoform X2 [Glycine max]
COG	YP_003291469.1	2.00E-124	AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
Swissprot	tr\|Q9M0X9\|4CLL7_ARATH	0	4-coumarate--CoA ligase-like 7
trEMBL	tr\|I1LL16\|I1LL16_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G20020.2}

Sequence

Transcript Sequence

>Glyur000093s00009394.1
ATGCTGCAAGTTATCCTCATCGATCTCTCATCCTCAGTTGGAATGTCTCAAACAACGACTCTGGTGTCAACAAACGCACCATTTGTTCACCATGTCAAATCAAAAGCCAAAACCAGATCCGGGTACGGTCATGATGGAATATATAGGTCTTTAAAGCCTTCCGTGGTGCTCCCCAACGACCCCAACCTCTCCCTCGTTTCATTCNTCTTCGATAGTGTATCCTCTTTCCCCAACAAAACCGCTCTCATCGACGCTGATTCNTCACAAACCCTCTCTTTTGCACAAATCAAATCCCAAGTCGCCAAGCTCGCTCACGGTTTCCTCCACCTCGGCATCAACAAAAATGATGTCATCCTCCTCTTCATGCNCAACAACATCCACTTCCCCATATGCTTCCTTGCCGCCACAGCCATCGGTGCCATCGTCTCCACCGTCAACCCTGTTTACACCATCGCGGAACTCACCAAACAAGTCAATGACTCCAACCCTAAGCTGGTAATCACNGTCCCTAAACTATGGAACAAGATGAAGGGTTTCAACCTCCCCACAGTGATTATCGGTTCCGAGAATGCAACGGGTTCGAATGTCACGAGTTTTTACNCGTTGATGGAGGTGGCAGGGCCAGTGATGGAGCTGCCAAAAAACGAGGTGAAACAAGGCGATACGGCGGTGCTTTTGAACTTCATCGCGGCATCACTTATGGGGGGCATGGACGATGATTTGGCGGGGGAGTTTCACGGTGTGTCCCTATGTGTTTTGCCGATGTTTCACATCTATGGGCTTGGGGTCATCGTGTACACACAGCTCCGACGGGGGTGCACGGTGGTGTCAATGGAGAGGTTTGACTTGAAGATGTTGTTGAAGGCCATTGAGAAGCACAGGGTGACAAATCTGTGGTTGGTGCCTCCCATCATGCTTGCTCTGGCAAAACAGGGTGTGCTTAATAAGTATGATTTGTCGTCGTTGAAGCATATTGCATGCGGTGNTGCTCCTCTTGGGAAGGAGTTGATGGAGGAGTGTGTCAGGCATTTACCTCATGTTACCATTTTTCAGGGCTATGGTATGACAGAAACTTGTGGCATTGTTTCTATGGAGAATCCAAGAGAAGGGAAACGTCATCCCGGCTCAACTGGAATGCTACTTTCAGGGCTCGAAGCTCAAATAGTGAGCGTGGATACACACAGGTCACTCCCTCCAAGACAGTTGGGGGAATTATGGATACGGGGTCCTACCATGATGCAAGGTTATCATAACAATCCACAGGCCACAAGATTGACTTTAGATAAAGAAGGGTGGGTACATACAGGAGATCTTGCATATTTTGATGAGGATGGGCAACTTTATATTGTTGATCGCCTCAAAGAACTGATCAAGTACAGAGGTTTTCAGGTTGCGCCAGCAGAACTTGAAGCGCTTCTCGTTTCTCACCCTGAAATACTAGATGCTGTTGTCATCCCATATCCAGATGATAAGGCTGGTGAGGTTCCAGTTGCATATGTTGTCCGTTCACCCAACAGTTCACTGACTGAGGAAGAAGTTCAGAAGTTTATTGCCAATCAGGTTGCACCTTTCAAAAGATTGCGAAGGGTGACGTTCATCGACAGTGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAAGGAGTTTATTGCAAAAGCACGATCCAAAAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00093	233015	237794	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01904	4CL	EC:6.2.1.12	Phenylalanine metabolism	map00360
			Ubiquinone and other terpenoid-quinone biosynthesis	map00130
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000093s00009394.1	PF00501.23	AMP-binding	72	171	4.90E-21
Glyur000093s00009394.1	PF00501.23	AMP-binding	242	460	9.40E-61
Glyur000093s00009394.1	PF13193.1	AMP-binding_C	468	543	2.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.122
SRR1783600	control	0.110
SRR1783602	moderate drought stress	0.103
SRR1811619	moderate drought stress	0.133

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.052
DRR006520	Root Summer glycyrrhizin high producing strain	0.062
DRR006521	Root Winter glycyrrhizin high producing strain	0.223
DRR006522	Root Winter glycyrrhizin high producing strain	0.276
DRR006523	Root Summer glycyrrhizin low producing strain	0.076
DRR006524	Root Summer glycyrrhizin low producing strain	0.076
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.225

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.071
SRR2868004	Drought Stress (root)	1.876
SRR2967015	Control (root)	1.674

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.259
SRR9715740	Leaf	2.099
SRR9715741	Leaf	1.638
SRR9715739	Root	0.000
SRR9715742	Root	0.103
SRR9715743	Root	0.233

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.509
SRR8749028	MeJA induced 9h	1.543
SRR8749029	MeJA induced 9h	1.127
SRR8749030	Uninduced	0.798
SRR8749031	Uninduced	0.298
SRR8749032	Uninduced	0.477

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.456
SRR8400027	Control - Root	0.747