Gene detail

Gene detail information of Glyur000093s00009387

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60770.1	0	nitrate transporter 2.4
NR	NP_001236444.1	0	NRT2 protein [Glycine max]
COG	YP_677931.1	1.00E-90	nitrate/nitrite transporter [Cytophaga hutchinsonii ATCC 33406]
Swissprot	tr\|Q9FJH8\|NRT24_ARATH	0	High affinity nitrate transporter 2.4
trEMBL	tr\|O64999\|O64999_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G39850.1}

Sequence

Transcript Sequence

>Glyur000093s00009387.1
ATGGCTGAAACAGAGGGGTCTCCTGGAAGCTCCATGCATGGAGTAACAGGAAGAGAACAAACCTTCATGTCCTCAGTTGCATCCCCAATGGTCCCAACCGACACCACAGCAAAATTCGATCTTCCAGTAGATTCAGAGCACAAAGCCAAGGTTTTCAAGCTGTTCTCCTTAGCCAACCCCCACATGAGAACCTTCCACTTGTCTTGGATTTCCTTCTTCACTTGCTTTGTCTCCACCTTCGCAGCAGCACCACTTGTCCCCATCATTCGTGACAACCTCAACCTCACCAAAAGTGACATCGGAAATGCCGGTGTTGCCTCTGTCTCGGGAAGTATCTTCTCTAGGCTCGCAATGGGTGCGGTTTGTGACCTTTTGGGTCCACGCTATGGCTGTGCCTTCCTCATCATGCTCTCTGCCCCAACCGTGTTCTGCATGTCGTTCGTGAAGGATGCTGCAGGGTACATAGCGGTTCGGTTCATGATTGGGTTTTCCTTGGCCACTTTTGTGTCGTGCCAGTACTGGATGAGTACCATGTTTAATGGTAAGATTATAGGGCTTGTGAATGGGACTGCGGCTGGGTGGGGTAACATGGGTGGTGGGGCCACTCAGCTCATAATGCCGTTGGTGTATGAGTTGATTCGTCGAGTTGGGGCTACACCTTTCACTGCTTGGAGGATTGCTTTCTTCATCCCTGGTTGGTTGCATGTCATCATGGGGATCATGGTCTTAACCTTAGGCCAAGATTTACCAGATGGCAACCTCGGTGCCTTGCAGAAGAAGGGTGATGTTGCCAAAGACAAGTTCTCCAAGGTGTTGTGGTATGCCATAACAAATTACAGGACATGGGTTTTTGCCCTCCTCTATGGGTACTCCATGGGAGTTGAATTAACCACTGACAATGTCATTGCTGAGTTTAATCTGAAGCTACACACTGCTGGAATCATTGCTGCNTCATTTGGAATGGCAAACATCGTAGCTCGCCCCTTTGGTGGATATGCATCTGATGTAGCAGCTCGGTTGTTTGGGATGAGAGGCAGACTCTGGGCACTGTGGATCCTCCAAACCCTTGGAGGGGTATTCTGCATATGGCTAGGCCGTGCCAACTCGCTCCCAATTGCAGTATTGGCCATGATCCTCTTCTCCCTTGGAGCTCAAGCGGCTTGTGGTGCAACTTTTGGCATCATCCCTTTCATCTCAAGGAGGTCTCTTGGTATCATATCAGGTCTAACAGGTGCAGGTGGAAACTTTGGTTCTGGTTTGACCCAGTTGGTCTTTTTCTCAACTTCCAAATTCTCAACAGCTTCTGGTCTCTCATGGATGGGTGCCATGATTGTGGGTTGCACTCTTCCCGTGGCTTTTGTTCACTTCCCACAGTGGGGTAGCATGTTCCTCCCTCCTTCAAAGGACATAAACAGATCCACTGAGGAACACTATTACACCTCTGAGTGGAACGAGGAGGAGAAGCAGAAAGGGTTGCACCAGCAGAGTCTCAAGTTTGCAGAGAATAGCCGCTCTGAGAGAGGAAAGCGTGTGGCCTCTGCCCCAACACCCACAAACACTACTCCCTCTCATCATGTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00093	198602	200662	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000093s00009387.1	PF07690.11	MFS_1	69	420	2.50E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.691
SRR1783600	control	4.576
SRR1783602	moderate drought stress	0.534
SRR1811619	moderate drought stress	0.509

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.068
DRR006520	Root Summer glycyrrhizin high producing strain	0.067
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.069
DRR006524	Root Summer glycyrrhizin low producing strain	0.069
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.995
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.938

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	508.743
SRR2868004	Drought Stress (root)	330.658
SRR2967015	Control (root)	620.866

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.117
SRR9715740	Leaf	0.303
SRR9715741	Leaf	0.246
SRR9715739	Root	3.202
SRR9715742	Root	13.789
SRR9715743	Root	11.815

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.135
SRR8749028	MeJA induced 9h	0.186
SRR8749029	MeJA induced 9h	0.174
SRR8749030	Uninduced	0.278
SRR8749031	Uninduced	0.275
SRR8749032	Uninduced	0.474

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	165.228
SRR8400027	Control - Root	60.176