Gene detail

Gene detail information of Glyur000093s00009384

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G28000.1	chaperonin-60alpha
NR	XP_004506047.1	PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Cicer arietinum]
COG	YP_001864897.1	chaperonin GroEL [Nostoc punctiforme PCC 73102]
Swissprot	tr\|P08926\|RUBA_PEA	RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Precursor)
trEMBL	tr\|I1LL25\|I1LL25_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G20180.2}

Sequence

Transcript Sequence

>Glyur000093s00009384.1
GTTCTTGTGTGTTACACTTCCTTATCCACACACTACTCCACATTCGAAGCACCCTGCACAACNCCAAACATGGCTTCCGCAAACGCTCTTTCCTCAGCCTCCATCTTGCGCTCTCCCAACCACCAGGTGCAGAGTCTCACGAGGAAGGTCAACCACAAAGGGAGGGTAAATTACAGGCAACCAAAACACCGTTTTGCGGTTAAAGCCTCCGCCAAAGATATCGCCTTCGACCAAAATTCACGCGCCGCCATGCAAGCTGGCATTGACAAGCTCGCCGACGCCGTTGGCCTCACTCTCGGCCCAAGGGGGAGGAATGTTGTGTTGGATGAGTTTGGAAGTCCTAAGGTAGTTAATGATGGGGTGACCATTGCAAGAGCTATTGAGCTACCTGATGCCATGGAAAATGCTGGTGCAGCTCTTATTAGGGAGGTTGCAAGTAAAACCAATGACTCTGCTGGTGATGGGACCACGACGGCTTCGGTTCTGGCTCGTGAAATCATTAAGCTTGGACTTCTAAGCGTGACTTCTGGTGCCAATCCTGTGTCCATCAAGAGAGGGATTGATAAAACTGTGCACGGTTTGGTCGAGGAGCTCGAGAAGAAGGCCAGGCCTGTTAAAGGTGGAGATGATATCAAAGCCGTTGCTACTATTTCTGCTGGGAATGATGAGTTGATTGGAAAAATGATTGCGGAAGCAATTGACAAGGTTGGACCTGATGGTGTCTTATCCATTGAGTCCTCGTCCTCGTTTGAGACAACGGTTGAGGTTGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCCCCACAATTTGTTACAAACCCAGAGAAATTGATTGTTGAATTTGAGAATGCAAGAGTTTTGATTACAGATCAGAAGATTTCAGCAATAAAAGATATAATTCCTCTGCTCGAGAAAACCACTCAATTGAGAGCCCCCTTGCTTATCATTGCTGAAGATATCACTGGTGAGGCTTTGGCCACCCTTGTTGTGAATAAGCTGCGTGGTATCCTTAATGTTGCTGCCATCAAAGCTCCGGGCTTTGGTGAGAGGCGAAAGGCCCTCCTTCAAGACATTGCTATATTGACAGGTGCTGAGTTCCAAGCTAGTGATTTGGGCCTGCTTGTTGAAAACACCTCAGTTGAACAGCTTGGTTTGGCTCGGAAAGTGACCATATCCAAGGGTTCTACCACTATTATTGCTGATGCCGCATCAAAGGATGAGTTGCAAGCCAGGGTTGCACAATTGAAGAAAGAGTTGTATGAGACAGACTCAGTTTATGATTCTGAGAAACTGGCTGAGAGAATTGCTAAATTGTCAGGTGGAGTTGCAGTCATCAAGGTCGGTGCTGCTACAGAGACTGAACTTGAGGATCGTAAGCTCCGAATCGAGGATGCTAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTTCCTGGTGGAGGTACTGCATTGGTTCATCTCTCTGCTCTTGTCCCAGCAATCAAGGATAAGCTTGAAGATGCAGATGAGAGGCTAGGAGCTGACATTGTGCAAAAGGCACTGGTAGCACCCGCTTCATTGATTGCTCAAAATGCTGGAATAGAGGGTGAGGTAGTTGTGGAGAAAATAAGGAATGGTGAATGGGAGGTTGGTTATAATGCCATGACAGACAAGTATGAGAATTTAGTTGAAGCCGGAGTCATCGACCCTGCCAAGGTAACAAGGTGTGCGTTGCAGAATGCTGCTTCAGTGGCTGGGATGGTCTTGACAACGCAGGCCATTGTGGTGGAAAAACCTAAGCCCAAGGCCCCTGTGGCTGCTGCCCCACAAGGCCTTACCGTTTGAGTTTTTGTTGTAGGGCTACGGCAAANAACAGTTTTGTGCAGAAATTGAAAGAGCGTGTGTCCGAATGTCTGTTCAATTGAGAAAAATTGTATTTGTAAACATAGTTTCAGATTTGTTTTTGGTTGACGAGGGAGGGACAAGGGAAGTTACAATATTGGATCCAAGTCATATCATGTTTTTTNTGAATTGGCCTACACTAATAGCTGCATGATTTATCAGCCCAATAAAGTGCAATAGGCTTACATAATTAATTGGATCACCTTCAACCTATCGTTNGTCACTTATTCCCATATGTCTCCACCTTAAACTCGTTACTTAAAAAACATAATTAAAAAATTTCTTACATTTCATACTATTTGATTAATGGTTATTCGTTGTATGGGTTGGTTTGTTTGTTTTTTGTTTTTTCTTTTGATATCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00093	154591	158094	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006457 protein folding

GO:0042026 protein refolding

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000093s00009384.1	PF00118.19	Cpn60_TCP1	68	571	1.20E-119

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	157.863
SRR1783600	control	158.329
SRR1783602	moderate drought stress	135.037
SRR1811619	moderate drought stress	134.686

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	155.292
DRR006520	Root Summer glycyrrhizin high producing strain	154.118
DRR006521	Root Winter glycyrrhizin high producing strain	78.755
DRR006522	Root Winter glycyrrhizin high producing strain	76.264
DRR006523	Root Summer glycyrrhizin low producing strain	109.766
DRR006524	Root Summer glycyrrhizin low producing strain	109.343
DRR006525	Leaf Summer glycyrrhizin high producing strain	230.044
DRR006526	Leaf Summer glycyrrhizin high producing strain	228.472

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	145.415
SRR2868004	Drought Stress (root)	92.011
SRR2967015	Control (root)	85.048

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	298.609
SRR9715740	Leaf	364.349
SRR9715741	Leaf	232.755
SRR9715739	Root	81.461
SRR9715742	Root	108.711
SRR9715743	Root	105.211

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	182.453
SRR8749028	MeJA induced 9h	108.263
SRR8749029	MeJA induced 9h	118.277
SRR8749030	Uninduced	23.848
SRR8749031	Uninduced	14.374
SRR8749032	Uninduced	27.496

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	169.115
SRR8400027	Control - Root	142.757