Gene detail

Gene detail information of Glyur000093s00009382

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60740.1	0	ABC transporter family protein
NR	XP_004506093.1	0	PREDICTED: ABC transporter G family member 28-like [Cicer arietinum]
COG	YP_006982423.1	2.00E-35	ABC transporter ATP-binding protein [Propionibacterium acidipropionici ATCC 4875]
Swissprot	tr\|Q9FF46\|AB28G_ARATH	0	ABC transporter G family member 28
trEMBL	tr\|K7LQD3\|K7LQD3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G20220.2}

Sequence

Transcript Sequence

>Glyur000093s00009382.1
ATGAACAAAAGAGAGGGACCCGACAAAATAAGGAAGGTTGATTTCGTTATAATTGTTATATTGTTCAATTGCAACATTGTGGGGCCAGGGCTAGTTTCTGGTCAAAAGAATGGTGGTGGTTCTAGTGCTGGGGTTGAGATATTCACCCAGGAAGTGTACCGTGGCATGTCCAATTATACATCTGTCTTCAAGGCTACAATACAGAAAGAGTTGGGTTTTTGCATAGTTGACGTGGACGCTGATTGGGATGGGGCATTCAATTTCACCAAAGATCTTACCTTTTTGACCATGTGCGCCCAGAGAATGAAAGGAGATATTACGCAGCGCATGTGCACAGCAGGAGAAATAGAAGCATATGCTCGAAGTTTTGCTACGGGGGACAAGTCATCAAGCTCAAGCAGAAGCAAATCCAACTTCTTGAAGCCCAACATAAACTGTAATTTGAGCTCATGGGTTAATGGATGTGAGCCCGGATGGGGCTGCAAAGCCAACCAGAAAGTGGACATTAACAGTAACAAGAAAGAGATACCTGTTAGATCTGTTGATTGCCAACCTTGCTGTGAAGGCTTCTTTTGCCCTCGTGGCATCACCTGCATGATACCTTGCCCTTTGGGTTCTTATTGTCCACAAGCGCAACTCAATAAAACTAGTGGAATATGTGAACCATATCGTTATCAACTACCTCCAGGAAAGGATAACCATACTTGCNGGGGAGCAGATATTTGGGCTGATATTACGAGTAGTAGCGAGGTATTCTGTTCAGCAGGATCATTCTGTCCATCTACAATCGTAAAAAATCCTTGCAATAAGGGGTATTATTGCAGAACAGGTTCTACATCTCAAGAGCGGTGTTTCAGGCTAGCATCCTGTGAGCCTAAATCATCAAATCAAAATATTACTGCATACGGTGTCCTGGCCGGCTTGTGTTTCATGCTTATTATCATATACAATTGTTCTGACCAAGTACTTGCAACTCGAGAAAGAAGACAAGCAAAATCAAGAGAAAGGGCTGCTGCAAGTGTAAGAGAAACACAAGCACGTGAAAAATGGAAATCTGCAAAAGATATTGCTAAGAAGCATGCAGTAGGACTGCAATCACAACTATCACGTACATTTTCCCGCAAAAAAACTTCAAAGATGCCAGATTTGAAAGGTTTTGGTTCTAAGCATTCAGAGCCTTCCTTACCACCTATGGCACCGGGAGGCGCTAGTACATCAAAAGGAAAGAAAAAGGATAAAAGCAACCTCTCAAAAATACTAAGTGATATTGAGCAAGACCCTGATAGTCAAGAAGGGTTCAATGTGACAATAGGAGATAAAAATGTCAAAAAGCAAGCACCAAGGGGTAAGCAGTTGCATACTCAGAGCCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCTTTAGCGGAACAAAACAAAAACCTGACCTTTTCTGGAGTGATTTCAATGGCTAGTGATATTGAGATAAGGAAGAGGCCTACCATTGAGGTTGCTTTTAAAGATTTAACCCTCACTCTGAAAGGGAAAAACAAACATCTACTAAGATGTGTGACTGGTAAAATATATCCTGGCAGAGTTTCAGCAGTTATGGGTCCATCTGGGGCTGGTAAGACAACATTTCTTTCTGCTTTAACTGGGAAAGCAACTGGAGTTCACACAACTGGGCAAGTTCTTGTAAATGGCAAAGAATCATCTATGCGGTCATACAAGAAGATCATTGGCTTTGTGCCACAAGATGATATTGTGCATGGCAATTTGACAGTGGAGGAGAATCTGTGGTTCAGTGCCAGATGCAGACTCTCTGCTGATCTGCCAAAAGAAGAGAAGGTGTTGGTGGTTGAAAGAGTCATTGAGTCCCTGGGCCTGCAGGCAATAAGGGATTCTCTGGTTGGGACAGTGGAGAAGCGGGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGACTTGAAATGGTTATGGAGCCTTCCCTTCTAATTTTGGATGAACCCACATCNGGTTTGGACAGCTCATCTTCTCAGTTACTGCTTAGAGCACTTAGACGTGAGGCTCTTGAAGGAATGTTTGATGATTTTATACTGCTTGCTAAAGGAGGTTTGACAGTGTATCATGGACCCGTGAACAAGGTGGAAGAGTACTTCTCCAGCATGGGGATTGTTGTCCCTGACCGTGTCAACCCTCCAGATTACTACATTGACATTTTAGAAGGAATAGTAAAACCAAGTGCAAGCTCAGGAGTGAGCTACAAACAACTACCAGTTAGATGGATGCTCCATAATGGGTACCCGGTACCCATGGATATGCTAGCAACTGTTGAAGGATTGACCACCCCAAGTGGTGATGGTTCATCACATGGAGGAGCAGCTAACCCTGCACAGAATGCTGATGTGCCTTCTTTTGCTGGAGAACTTTGGCAGGATGTGAAATGCAACGTTGAGATGAAGAGGGACAACCTTCAACTCAACTTCTTGAACTCAAACGACTTGTCCAATAGGGAAACACCCGGAGCATTCCAACAATACAAATACTTTCTTGGAAGGCAACGGTTAAGAGAAGCTAGAACACAAGCTGTAGATTTTCTGATTTTGCTGTTAGCTGGCCTCTGCTTAGGAACCCTTGCGAAAGTGAGTGATGAATCGTTTGGAGCAACTGCACTTCTTTCCAAGATTGCGGCTCTAAGATCGTTCTCGTTGGATAAGTTGCACTACTGGAGGGAAAGTGCTTCGGGGATGAGTAGCCTTGCTTACTTTCTTTCAAAGGATACAGTTGACCATTTCAGTACACTTATCAAACCTCTGGTTTATCTCTCCATGTTCTATTTCTTCAACAATCCAAGATCATCTTTNACAGATAACTACATTGTTCTGCTATGCTTGGTGTATTGTGTCACTGGCATAGCTTATGTGTTGGCTATCTTCCTTCAACCAGGTCCAGCTCAGCTGTGGTCAGTGTTACTTCCAGTAGTTTTGACTCTCGTAGCAACCTATGATGATGAAGAGGATAGCAAATATGTGCAATTCCTATCCGATTTGTGCTACACCAAGTGGGCTCTTGAAGCGTTTGTAATATCAAATGCTAAAAGATACGCTGGAGTTTGGTTAATAAGTCGATGTGGTGCACTNTACTCAAGTGGCTATGATCTCAAACATTGGTACCAATGTTTAGCACTCCTTGTTCTGACCGGAATAATTAGTCGCATGCTTGCATTTTTTTGTATGATAACCTTCCAGAAGAAATAG

Protein Sequence

>Glyur000093s00009382.1
MNKREGPDKIRKVDFVIIVILFNCNIVGPGLVSGQKNGGGSSAGVEIFTQEVYRGMSNYTSVFKATIQKELGFCIVDVDADWDGAFNFTKDLTFLTMCAQRMKGDITQRMCTAGEIEAYARSFATGDKSSSSSRSKSNFLKPNINCNLSSWVNGCEPGWGCKANQKVDINSNKKEIPVRSVDCQPCCEGFFCPRGITCMIPCPLGSYCPQAQLNKTSGICEPYRYQLPPGKDNHTCXGADIWADITSSSEVFCSAGSFCPSTIVKNPCNKGYYCRTGSTSQERCFRLASCEPKSSNQNITAYGVLAGLCFMLIIIYNCSDQVLATRERRQAKSRERAAASVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKKTSKMPDLKGFGSKHSEPSLPPMAPGGASTSKGKKKDKSNLSKILSDIEQDPDSQEGFNVTIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKIYPGRVSAVMGPSGAGKTTFLSALTGKATGVHTTGQVLVNGKESSMRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLSADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGIVVPDRVNPPDYYIDILEGIVKPSASSGVSYKQLPVRWMLHNGYPVPMDMLATVEGLTTPSGDGSSHGGAANPAQNADVPSFAGELWQDVKCNVEMKRDNLQLNFLNSNDLSNRETPGAFQQYKYFLGRQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATALLSKIAALRSFSLDKLHYWRESASGMSSLAYFLSKDTVDHFSTLIKPLVYLSMFYFFNNPRSSXTDNYIVLLCLVYCVTGIAYVLAIFLQPGPAQLWSVLLPVVLTLVATYDDEEDSKYVQFLSDLCYTKWALEAFVISNAKRYAGVWLISRCGALYSSGYDLKHWYQCLALLVLTGIISRMLAFFCMITFQKK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00093	144781	150591	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000093s00009382.1	PF00005.22	ABC_tran	521	670	4.70E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.877
SRR1783600	control	0.870
SRR1783602	moderate drought stress	1.432
SRR1811619	moderate drought stress	1.513

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.884
DRR006520	Root Summer glycyrrhizin high producing strain	0.987
DRR006521	Root Winter glycyrrhizin high producing strain	0.987
DRR006522	Root Winter glycyrrhizin high producing strain	1.164
DRR006523	Root Summer glycyrrhizin low producing strain	0.533
DRR006524	Root Summer glycyrrhizin low producing strain	0.593
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.423
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.319

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.360
SRR2868004	Drought Stress (root)	2.312
SRR2967015	Control (root)	2.476

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.284
SRR9715740	Leaf	0.260
SRR9715741	Leaf	0.122
SRR9715739	Root	0.000
SRR9715742	Root	0.247
SRR9715743	Root	0.239

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.285
SRR8749028	MeJA induced 9h	2.955
SRR8749029	MeJA induced 9h	2.124
SRR8749030	Uninduced	4.064
SRR8749031	Uninduced	3.026
SRR8749032	Uninduced	2.883

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.381
SRR8400027	Control - Root	1.678