Gene detail information of Glyur000093s00009379 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60720.1 | 7.00E-144 | Protein of unknown function, DUF547 |
| NR | XP_006591129.1 | 0 | PREDICTED: uncharacterized protein LOC100809848 [Glycine max] |
| COG | YP_002016157.1 | 9.00E-12 | glycoside hydrolase 15-like protein [Prosthecochloris aestuarii DSM 271] |
| trEMBL | tr|K7LQD4|K7LQD4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G20230.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00093 | 132733 | 139155 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000093s00009379.1 | PF14389.1 | Lzipper-MIP1 | 138 | 225 | 1.20E-19 |
| Glyur000093s00009379.1 | PF04784.9 | DUF547 | 498 | 633 | 3.70E-33 |
| Glyur000093s00009379.2 | PF14389.1 | Lzipper-MIP1 | 137 | 208 | 8.80E-15 |
| Glyur000093s00009379.2 | PF04784.9 | DUF547 | 481 | 616 | 3.60E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.849 |
| SRR1783600 | control | 1.929 |
| SRR1783602 | moderate drought stress | 2.060 |
| SRR1811619 | moderate drought stress | 2.134 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.845 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.719 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.627 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.156 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.342 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.327 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.173 |
| SRR2868004 | Drought Stress (root) | 6.714 |
| SRR2967015 | Control (root) | 5.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.130 |
| SRR9715740 | Leaf | 0.837 |
| SRR9715741 | Leaf | 0.398 |
| SRR9715739 | Root | 0.133 |
| SRR9715742 | Root | 3.589 |
| SRR9715743 | Root | 2.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.097 |
| SRR8749028 | MeJA induced 9h | 0.502 |
| SRR8749029 | MeJA induced 9h | 0.332 |
| SRR8749030 | Uninduced | 0.226 |
| SRR8749031 | Uninduced | 0.275 |
| SRR8749032 | Uninduced | 0.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.629 |
| SRR8400027 | Control - Root | 17.512 |