Gene detail

Gene detail information of Glyur000093s00009375.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33580.1	3.00E-53	Protein kinase superfamily protein
NR	BAI79279.1	0	LysM type receptor kinase [Lotus japonicus]
Swissprot	tr\|O22808\|LYK5_ARATH	4.00E-58	Protein LYK5 (Precursor)
trEMBL	tr\|D3KU02\|D3KU02_LOTJA	0	LysM type receptor kinase {ECO:0000313\|EMBL:BAI79279.1}

Sequence

Transcript Sequence

>Glyur000093s00009375.1
ATGATTCGTCTTTGGTTTGTTGCCTGGATGTGCTTAAGTGTATGCTTTGCTCAACTGTCTTACGACCCTTCTAATTGTACTTCAAATGAAGGGTCAATGTACAAATGCAATTCAACACACGATTCATGCAAAACATTCTTGGTGTATAGAACCAATCAACGTTTCAAGACCATTTCACAAGTCTCAAAGCTCTTCAACAAGAAATCTGATGAGGTGCTTCACATAAACAACCTCACATCTTCCTCTCAGCCACTCAAACAAGGCAAAGAGGTTCTTCTTCCTGTTGATTGCACCTGCAATCACCAATTTTACCAAACCAGTCTCATCTATAAAGTCCCTGAAGTTACAACATATTCCGAGATTGCTTGTGGGGTTTTTGAAGGACTAGTGAACCATCTCACCCTGGTTGAGGAAAACCTTCCACGTGGTGATAAGCTAGAAGCGGGTGCTGAGCTTCACGTGCCTCTTAGATGTGCATGTCCAGAAAGTTTATCCACTAGGAAAGGTGTGAAGTACCTTGTCACATACCCTATAATACAAGGAGATGATTTTGATAAANTGAGTTACAAATTTGGTATCTCACATGAAGATTTCTTGGAAGTTAATCACTTGGACCCCTTCTCATCTATTTTCCCTAAGACAGTTGTTTTGATTCCATTAGGGGATGGCCCAATCAGCATACTTGATATCCCGGATTCTCCTTCTCCACCTCCTGGTTTTCTTCCCACAAATCCAGTGGTGGTTCATACACAGGAATCCACACAACCATCAAATTTGTACATTGCAGGGTCCATTATAGGATTTATGNTGTTCATGACATTGCTTGCAAGTGGACTCTACATGAAGAGGATGAGGAAAAGTGATGTTGTCCATTCTTTTAATCCAACAAACTCATCTCCCAGTTTCACCTTGTGGTCACCAATGAGAAGCCCCACAAGTACTTGGTGCCTATCTCCAGAACTTCTTATTGGGATAAAGTACTGCTTGCTCAATTACCACTTAGAAGAGCTAGAGAAGGCCACAGAGAATTTCAGTGAAGAGAACAAGATTGGTGATTCAGTTTATAAGGGGTTAATCAATCATGTTGAGGTGATGATAAAGAGGATGAGGCTTGAAGACATGGGACAGGTAATTGATTTGCATTCCAAAATCAATCATGTTAATATTGTGAACTTGCTTGGTGTTTGCTATGGTGAGAATATCAGCAATGTTTCATCATGGTCTTATTTGGTTTTTGAGTTGCCTAAAAATGGGTGTTTGAGGGACTGTTTATCTGACCCATGCAATCCTCTAAACTGGTACAGAAGGACACAAATAGCATTTGACATTGCAACATGTCTTTACTATTTGCATTATTGTTCTTTTCCTTCCTATGCTCACATGAATGTCAGTAGTAGAAATGTGTTCATAACTGCAAACTGGAGAGGGAAACTGGCAGATGTAGGTGGGGTATCTGATGCAAGAGCTACAGAAATTTCAAAAGGGTGGGTGGCACAGGAGAAAGTTGACATTTTTGCATTTGGGGTTGTCTTGCTTGAGTTGATCTCAGGAAGGGACAATTTTGATGGGAATTCAATCAAGGATTCCCTTGGGTTTTTGTTGGGGAGAGCCAGTGAAGGGGGTTGTTTTGAAGGGTTGAGGAGTTTCATGGATCCTAATTTGAAGGACTATTCTCTTCCAGAGGCTCTGTGTTTGTCCTTTTTAGCAAAGGATTGTGTGGCAGATGATCCACTGCATAGGCCTACTATGGATGATATCATGAAAGTCATTGCAAAAATGGAACGGGCCTCTGGGTCTAATATAGGTGGCCAGGATGACACTTGGAAGAACATTTGGAAGCTTGCTATCCTCCCAAAGCAAGCACACCTGTTGTGGAAGATCATTAAAAATGTTATCCCTGTGCGTGCTAATCTTGCCAGAAGGGGTGTTTCGTCCCCCCTGCACTGCCCACGATGTGATGCCCAGGTGGAGGATCTCAACCATGTTTTTCGTGATTGTCCATGGGCTACCCAGATTTGGTTTTGCTCGCACTTGGGTATTCGGTTTGACCAAGATAGTGATGAATCAGTGGTTCAGTGGCTGTCAACTATGCTTAAATCTGCTCCCAAAGAGGTGATGGAAACGATAGCTTCTCTTCTCTATGGTATCTGGTGGGCTAGGAATAAATGCTGCTTTGATAACATCCAAACGAAGGTGATTGATACTGTTGCAAAAGCAAGTTCCATTTTGCAAGAATATAAGACTAAATGCATGGCACATGCTCCCACCTATAACCATCGGCCAAATATTCCTATTATCAACAAGTGGAAACCACCACCTACTCATTTATATAAAATGAATGTAGACGCAGCTCACACTGATTGTGGAAAGTGGGGTATAGGTGTCATCGTTAGGAATCATGAGGGAAGAATTGTTTATGCGGCTGCAACCTTCCAAATCCAATGCCTAAATGATTCAAGCCTTGCGGAAGCAATGGGAGTGCGGCTGGGAATGATCTTTGCGCTTNANATGCTTTTTCTTGATTTAATTGTTGAGTCTGATGCGCTGGTTGTTATTGAGGCNTTGAAAAACGGTGGCNCTGCTATGTCTCTCCTCAGTTCAGTTATAGATGATTGTAAGCAGTTTGAGCCTTGTTTTCACAATCTTATGTGTTCTCATGTGGGTAGAATGGGAAATCAAGCTGCTCATGGTTTAGCCAAGCATGTTCTTAGTCATCAGGACACTGTNTGGTTAGAGGAAGTTCCTCCACCTATCTCTTCTTGTATTTTTGCGGACAGGTTCCCACCTTCCACGTCTTATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00093	100498	104916	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0003676 nucleic acid binding

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000093s00009375.1	PF07714.12	Pkinase_Tyr	363	587	1.50E-15
Glyur000093s00009375.1	PF13966.1	zf-RVT	606	673	9.60E-13
Glyur000093s00009375.1	PF13456.1	RVT_3	821	903	8.10E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.143
SRR1783600	control	0.144
SRR1783602	moderate drought stress	0.401
SRR1811619	moderate drought stress	0.490

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.318
DRR006522	Root Winter glycyrrhizin high producing strain	0.193
DRR006523	Root Summer glycyrrhizin low producing strain	0.118
DRR006524	Root Summer glycyrrhizin low producing strain	0.158
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.132
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.105

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.490
SRR2868004	Drought Stress (root)	7.953
SRR2967015	Control (root)	3.972

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.630
SRR9715740	Leaf	0.458
SRR9715741	Leaf	0.509
SRR9715739	Root	0.145
SRR9715742	Root	0.262
SRR9715743	Root	0.195

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.664
SRR8749028	MeJA induced 9h	1.044
SRR8749029	MeJA induced 9h	0.723
SRR8749030	Uninduced	1.051
SRR8749031	Uninduced	0.481
SRR8749032	Uninduced	0.301

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.339
SRR8400027	Control - Root	0.741