Gene detail

Gene detail information of Glyur000093s00009368

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27490.1	9.00E-111	3'-5'-exoribonuclease family protein
NR	XP_003606365.1	4.65E-174	Exosome complex exonuclease MTR3 [Medicago truncatula]
COG	NP_275826.1	4.00E-36	exosome complex exonuclease Rrp41 [Methanothermobacter thermautotrophicus str. Delta H]
trEMBL	tr\|G7JND2\|G7JND2_MEDTR	2.00E-174	Exosome complex exonuclease RRP41 {ECO:0000313\|EMBL:AES88562.1}

Sequence

Transcript Sequence

>Glyur000093s00009368.1
AAACCTGAACAGAACAAGTGAAGCGAAGCGACCCCAGAGTGGTGACCGCCGTTGGGAATGGCCGGCAAAGGTGGAACGANTCCGGCGACATACTCGCCGTCTCCGACGACCGATAAAAGGAAATCAACNCTTTTCAAGGAAGAAGATTGGGTCCGACCCGACGGCCGCGGCTTCCACCAGTGCAGGCCTGCCTTTTTCAGGACTGGTGCTGTGAATGCTGCATCAGGATCTGCTTATGCGGAGTTTGGAAATACCAAGGTCATTGTATCTGTATTTGGGCCAAGAGAGAGCAAGAAGGCAATGATGTACAGTGATACAGGGCGTCTGAATTGCAATGTCAGCTATACAACGTTTGCAACTCCAGTTCGTGGACAGGGTTCAGACCACAAAGAGTACGGTGCAATGCTTCATAAAGCTTTGGAGGGTGCAATAATATTGGAAACCTTCCCCAAGACAACCGTGGATGTTTTTGCATTGGTGCTGGAATCTAGCGGCAGTGATCTTCCAGTTGTCATATCATGTGCTAGTCTTGCCCTGGCAGATGCTGGAATAATGATGTATGACCTTGTTGCCTCAGTTTCTGTGTCATGTCTCGGTAAGAATCTTGTCATTGATCCTATTTCGGAGGAGGAAAACTGCCAAGATGGAAGCTTAATGATTACTTGCATGCCTTCTCGCTATGAAATCACCCAACTTACAGTTACGGGGGAATGGTCCACCCCAAAGATTAATGAGGGAATGCAGTTGTGCTTGGATGCTTGTGCAAAGCTTGCAAAGATTATGAGGTCATGTTTGAAAGAAGCTGCTTCTGATTCACAGGAATAGGATGAGAGTTCTTAGTCAACGCACAGATCACAAGATGTGCTGTTAAATTGTTTTGTTTTNCTTTTTCTTCTTCTACCTCAACATTGGGAGAGAATTTTGTGTTGGAGGAGGGAGGTAGGGAAAGATGTCTCGCATGTCCTGCAAATTTTGTGCTTATGAGCTTGTCAAAGATAATTGGGAAATTATTCCTATAGCAACAGAGTTTGCAAATGCATGCCACTTAATGCACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00093	51880	55048	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000093s00009368.1	PF01138.16	RNase_PH	41	165	1.20E-28
Glyur000093s00009368.1	PF03725.10	RNase_PH_C	169	230	7.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.547
SRR1783600	control	15.709
SRR1783602	moderate drought stress	14.739
SRR1811619	moderate drought stress	14.507

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.022
DRR006520	Root Summer glycyrrhizin high producing strain	23.683
DRR006521	Root Winter glycyrrhizin high producing strain	12.421
DRR006522	Root Winter glycyrrhizin high producing strain	12.123
DRR006523	Root Summer glycyrrhizin low producing strain	20.458
DRR006524	Root Summer glycyrrhizin low producing strain	20.702
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.688
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.694

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.353
SRR2868004	Drought Stress (root)	24.404
SRR2967015	Control (root)	25.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.977
SRR9715740	Leaf	15.110
SRR9715741	Leaf	9.613
SRR9715739	Root	18.383
SRR9715742	Root	17.819
SRR9715743	Root	17.455

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	60.700
SRR8749028	MeJA induced 9h	21.499
SRR8749029	MeJA induced 9h	28.087
SRR8749030	Uninduced	4.430
SRR8749031	Uninduced	1.202
SRR8749032	Uninduced	7.102

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.502
SRR8400027	Control - Root	24.843