Gene detail information of Glyur000093s00009367 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53720.1 | 2.00E-09 | cation/H+ exchanger 20 |
| NR | KDO43692.1 | 1.07E-18 | hypothetical protein CISIN_1g036676mg [Citrus sinensis] |
| Swissprot | tr|Q9M353|CHX20_ARATH | 5.00E-17 | Cation/H(+) antiporter 20 |
| trEMBL | tr|A0A067DXH8|A0A067DXH8_CITSI | 4.00E-19 | Uncharacterized protein {ECO:0000313|EMBL:KDO43692.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00093 | 50338 | 51272 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.096 |
| SRR1783600 | control | 2.869 |
| SRR1783602 | moderate drought stress | 2.168 |
| SRR1811619 | moderate drought stress | 2.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.812 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.951 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.316 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.251 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.650 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.523 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.807 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.391 |
| SRR2868004 | Drought Stress (root) | 13.504 |
| SRR2967015 | Control (root) | 13.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.099 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.041 |
| SRR9715739 | Root | 0.558 |
| SRR9715742 | Root | 0.392 |
| SRR9715743 | Root | 0.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.479 |
| SRR8749028 | MeJA induced 9h | 7.312 |
| SRR8749029 | MeJA induced 9h | 1.662 |
| SRR8749030 | Uninduced | 2.608 |
| SRR8749031 | Uninduced | 3.063 |
| SRR8749032 | Uninduced | 4.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.825 |
| SRR8400027 | Control - Root | 0.419 |