Gene detail

Gene detail information of Glyur000093s00009366

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28260.1	0	cyclic nucleotide-gated channel 15
NR	XP_006592705.1	0	PREDICTED: putative cyclic nucleotide-gated ion channel 15-like [Glycine max]
COG	YP_724331.1	4.00E-23	cyclic nucleotide-binding protein [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9SL29\|CNG15_ARATH	0	Putative cyclic nucleotide-gated ion channel 15
trEMBL	tr\|I1LTK6\|I1LTK6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G29840.1}

Sequence

Transcript Sequence

>Glyur000093s00009366.1
CTCTAATGCAATATAGAAAGATGTATTCAGTAATGCTTTACTTATCTTTTAGTATCAGCATCAACATATAACCCTTTAACATAAAGTTTCAAATTTTAGATTCNAAGATGATCTTGAACTAGCAAAAATGCCAGCAACTAACGGTGACGTCAANAGAAAACAAATGGCTGATGATCAGAAAGAGACAGGGAAGTTCTTGAAAACTAGAGTGTTGTCAAGAGTTTTCTCAGAGGACTACGAGAGAGTAAGAAGAAGAGTAGTATTAGATCCCCGGGGACAAACCCTTCACCGGTGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTCTCTTCTTTTACTTGCCACTAGTTCGAGATGAAGTATGCATTGATATTGGAATATCACTTGAAGTTGTCCTCATGATNATCAGATCAATGGCAGATGTCTTTTACATCATTCAGATTCTCATGAGGTTTCGTACAGCATATGTTGCTCCTTCTTCCAGGGTGTTTGGGAGAGGAGAGCTTGTTATAGACTCTTCTAAGATNGCAACTAGGTACCTGCAAAAGGGTTTCTGGTTAGACTTTATTGCTGCCCTTCCCCTTCCTCAGGTGTTAATTTTGATTGTCATCCCTAATCTTGGAGGTTCAACCATGGCAAACACAAAAAATGTCCTTCGCTTTATCATAATTTTCCAGTATTTGCCGAGGCTGTTTCTCATTTTCCCACTTTCATCCCAAATTGTAAAAGCTACTGGGGTTGTGACAGAAACAGCATGGGCAGGAGCTGCTTACAACTTGATGCTTTACATGTTGGCTAGCCATATTTTAGGNGCTTGCTGGTATCTTCTATCAATTGAACGACAAGAAGCATGCTGGAGGAGTGTCTGCGAGATGGAGGAGTCATCTTGTCAATTTGAATTTTTTGACTGCAACAGGGTTAAAGATTCCCTCAGGGTCTCCTGGTTNACGACAAGTAATGTCACAAATTTATGCTCACCAAATGCTCGCTTTTATCAGTTTGGTATATACGGTGATGCAGTGACATCCGGAGTTACAACCTCTGCATTCTTTAATAAGTACTTCTTTTGTCTTTGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTTTGCTGGAGAAATAATGTTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCATTGCTCATTGGTAATATGCAGACATACCTACAATCAACAACTGTCCGCTTAGAAGAGTGGAGGGTCAAAAGAACTGACACAGAGCAATGGATGCATCACAGGCAGCTACCTCCAGAACTAAGACAATCCGTGCGTAAATACGACCAATACAAATGGTTGGCTACACGAGGAGTAGAAGAAGAAGCCCTTCTCAAAGGACTCCCAGTTCCATTGTTTGACCAAATGGATGAGAGGATGCTGGACGCAATATGTGAAAGGCTAAAGCCTGCACTGTGCACAGAGAGCACGTGTCTGGTTCGTGAGGGTGACCCTGTGAATGAGATGCTCTTCATAATTAGAGGACATCTTGATTCTTACACCACCAACGGAGGCCGCACCGGTTTCTTCAACTCGTGTCGTATTGGGCCTGGTGATTTCTGTGGCGAGGAGCTTCTGACATGGGNCTTGGACCCACGACCAAGTGTTGTGACACTTCCTTCTTCCACTCGAACAGTTAAGGCCATCTCAGAAGCAGAGGCCTTTGCCCTCATAGCTGAAGACCTTAAATTTGTTGCGTCTCAATTTAGAAGACTGCACAGCAAGCAACTTAGGCATAAGTTCAGGTTTTACTCACACCAGTGGAGAACGTGGGCTGCGTGTTCCATACAAGCTGCATGGAGACGGCACAAGAAGAGAAAGGGTGTTGCTGCTGAATTGAGGGCCACGGTTGATGAGCCTGATCAAACACCAACGTATGTGTATGCAACAAGGAGCGCTACGAATTCTGGGACAGATTCTGGGGTTGAGACTGACAGCCTGAAGCCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00093	41409	46571	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0006813 potassium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0005216 ion channel activity

GO:0005249 voltage-gated potassium channel activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000093s00009366.1	PF00520.26	Ion_trans	102	365	5.00E-16
Glyur000093s00009366.1	PF00027.24	cNMP_binding	454	546	8.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.503
SRR1783600	control	10.458
SRR1783602	moderate drought stress	7.188
SRR1811619	moderate drought stress	7.564

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.846
DRR006520	Root Summer glycyrrhizin high producing strain	3.495
DRR006521	Root Winter glycyrrhizin high producing strain	8.157
DRR006522	Root Winter glycyrrhizin high producing strain	8.130
DRR006523	Root Summer glycyrrhizin low producing strain	0.752
DRR006524	Root Summer glycyrrhizin low producing strain	0.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.479
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.538

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.156
SRR2868004	Drought Stress (root)	2.040
SRR2967015	Control (root)	1.943

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.325
SRR9715740	Leaf	0.468
SRR9715741	Leaf	0.982
SRR9715739	Root	4.116
SRR9715742	Root	10.486
SRR9715743	Root	9.032

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.332
SRR8749028	MeJA induced 9h	1.974
SRR8749029	MeJA induced 9h	1.748
SRR8749030	Uninduced	0.867
SRR8749031	Uninduced	0.325
SRR8749032	Uninduced	0.850

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.653
SRR8400027	Control - Root	9.660