Gene detail

Gene detail information of Glyur000093s00009365

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28305.1	2.00E-103	Putative lysine decarboxylase family protein
NR	AFK33887.1	8.65E-149	unknown [Lotus japonicus]
COG	YP_686619.1	9.00E-64	hypothetical protein RCIX2172 [Methanocella arvoryzae MRE50]
Swissprot	tr\|Q8L8B8\|LOG3_ARATH	6.00E-131	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3
trEMBL	tr\|I3S0U5\|I3S0U5_LOTJA	3.00E-149	Uncharacterized protein {ECO:0000313\|EMBL:AFK33887.1}

Sequence

Transcript Sequence

>Glyur000093s00009365.1
GTACAAGCACTCAGGGAGCAAACTAAACCTTTGAAACTGTATTGTATTNTAGAACATCAAGAGGGAGAGTTCATCTTCGCCTTGTAGTTCAGTGTTCCTATTCGAATACTCAATTTGGTGAAACCAAAACGCGCAATGATCTTGACATAGGACCACGGATTGTCTTTCTTTCTTTCTTTTTTCTTTATCTTTTCTGGTACATACAGGGGACCATGGTAAAGTAGAAACAAACACACACATGTCTGGTGTATCTCAAGTCTTCNCCTACGTACAATTTGGGAGGAGTCATCATCGTCATCGCTCATGATGTGATAATGGCTCCACATTAGAATGCACCCTCGCGTGTGCCTCTGCCTCTGCTACCATTATTATATATAGGGGTGCGCGCGTAGACACTCACATCAAACTGTTCACCCCAATTCTCAAGCAAGCCTTGGCGATACACACAGAACAGAACAGAACAGAACAGAAGCAGGGGATGGTAGAGTGTGAGAGAAAAGAGATGGAGAAGAAGGGGGAAACTGAGATGAAACAATCGAGGTTTAAGAGGATTTGTGTGTTCTGTGGTAGCAGCCCTGGGAATAAGAGCAGCTATAAAGAAGCTGCTATTGAGCTTGGAAAGGAATTGGTGTCAAGAAATATTGATCTGGTTTATGGAGGAGGCAGCATTGGTTTGATGGGGCTGGTTTCTCAGGCTGTTTATGATGGAGGTCGCCATGTAATTGGGGTTATTCCCAGGACACTCATGCCAAGAGAGATTACTGGAGAGACAGTGGGGGAAGTGAAGGCAGTAGCAGACATGCATCAAAGAAAAGCAGAGATGGCTAGGCATTCTGATGCATTTATTGCCTTACCCGGTGGCTACGGGACACTTGAGGAGCTTCTTGAGGTGATAACTTGGGCTCAGCTTGGCATCCATGATAAACCAGTGGGATTGCTGAATGTAGATGGATACTACAATTCCTTGTTATCTTTCATTGACAAAGCTGTGGAGGAAGGGTTCATTAGCCCCAAAGCTCGCCACATTATTGTATCTGCCCCATCAACAAAAGAGCTTGTCAAAAAGATGGAGGAATATTTCCCACANCACGAAAGAGTTGCCTCTAAGCTGAGCTGGGAAACTGGGCAGCAGCTGGATTACTCTTCAAATAGTGACATCTCAAGTTGTGATTAGATGATAGTGGAAAAGTATATGGGGTAGAGACAGTTGTTAGTTCAATGGTTTAAGAAACTTATGACCGGAATTCTTTTATGCTCTTGCATTTTTCTTGTTAGTGTGAACTACAGAACTGACTGCAATCTAGCTGTGAAGCCTAACTACTCTGTTCAAGTTCAATACTTCAATGTGAATTCTGGTTTTTCAAGACTGAATTCGTTTGCCCATAGCTTAGGAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00093	24679	29559	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000093s00009365.1	PF03641.9	Lysine_decarbox	67	197	3.40E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.261
SRR1783600	control	0.308
SRR1783602	moderate drought stress	0.318
SRR1811619	moderate drought stress	0.303

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.534
DRR006520	Root Summer glycyrrhizin high producing strain	1.534
DRR006521	Root Winter glycyrrhizin high producing strain	24.862
DRR006522	Root Winter glycyrrhizin high producing strain	24.185
DRR006523	Root Summer glycyrrhizin low producing strain	1.578
DRR006524	Root Summer glycyrrhizin low producing strain	1.639
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.533
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.063

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.008
SRR2868004	Drought Stress (root)	1.672
SRR2967015	Control (root)	1.967

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.647
SRR9715740	Leaf	10.309
SRR9715741	Leaf	12.514
SRR9715739	Root	0.128
SRR9715742	Root	0.434
SRR9715743	Root	0.153

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.068
SRR8749028	MeJA induced 9h	0.494
SRR8749029	MeJA induced 9h	0.672
SRR8749030	Uninduced	0.142
SRR8749031	Uninduced	0.141
SRR8749032	Uninduced	0.486

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.735
SRR8400027	Control - Root	1.209