Gene detail

Gene detail information of Glyur000092s00007551

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G26700.2	fimbrin 1
NR	XP_003519607.1	PREDICTED: fimbrin-1-like isoform X1 [Glycine max]
Swissprot	tr\|Q7G188\|FIMB1_ARATH	Fimbrin-1 {ECO:0000303\|PubMed:11123801}
trEMBL	tr\|K7KBJ8\|K7KBJ8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G46580.2}

Sequence

Transcript Sequence

>Glyur000092s00007551.1
CTTCTTTGTCTTCTCTTCTCTCTCACGTTGCCACCCCATCAAGAAAAATCGATCCTTTCTCTCTTTTCTCTTCTCTTCTTCTCGATATCTTGTGCTCTCCATGTTCCTTCATTCAATGTGCTGCCTCTGAAATAATGAGGGGCAGTTGAGCCATATCTGANTTTTATGTACAGGATAACGTTGGACAGGTTGGTGAATGGTGACTTCCAGCAGCTAAACCACTTATTGTTTGGGTTTTGCTGCAGATTTTGGTTTGAACGTGTAAAATTGCATCTGGCATTGGTTTGTTGAGTAGTGCACATTGTTCGTTTTGCAAATATTTTTAAGCTTTTTTTTTTTCCCTCCTTTCTGGGGAAGACAAGTTTGTAGTTTGGGGGATACATTTTGTAGCTGCGATTTGGCTCTCTCTTTGTGTGTTAGTGATTCATCGAGATGTCAAAATTTGAGGGTGTCATTGTCTCCGATCAATGGCTTCAAAGCCAATTTACGCAGGTTGAACTTCGCAGCCTGAAATCAAAATTTGTCTCATTGAAAAATCAGAAAGGTAAAGTCACATTTGGAGATTTGCCACCTTTAATGATGAAGCTAAAGGCATTCACAGAAATGTTCAGTGAAGATGAGATTAGGGGGATCTTGGGTGAGTCAGGCACTGACTTTACCAATGATGTTGATTTTGAAGCCTTCTTAAGGGCATATTTGAATTTGCGAAGCCAAGCTACCGCAAAACAAGGTGGTGTGAAGCACTCCTCAACATTCCTTAATGAAACTGTAACTACCCTTCTTCACACAATCAGCGGATCGGAAAAAGGCTGTTATGTTGCTCACATAAACAGCTACCTTGGTGATGATCCATTTCTGAAGCAATTTCTTCCTTTGGACCCAGCTACAAATGATCTATTTGATCTTTCAAAAGATGGCATTCTTCTGTGTAAGCTTATCAATGTTGCGAGAAATGAGAACCATACTCTATGCCTCAATTCTGCTAAGGCTATTGGCTGCACAGTGGTCAACATTGGCGCACAGGACTTAGTTGAAGGAAGACCTCATCTTGTCCTGGGGTTGATTTCCCAAATCATTAAGATCCAACTACTGGCTGATCTCAACCTTAAGAAGACACCTCAGCTTGTGGAATTGGTTGAAGATAGCCAGGAGATTGAAGAGCTTCTTAATTTGTCTCCTGAAAAGGATGGAGAGGCTTATGCTTATCTGCTTAATGTCCTTGCTCCTGAACATTGCAGTCCAACCACCTTGGATACTAAAGATGCCTATGAAAGAGCAAATCTGGTTCTTGAACATGCAGAGAGAATGGGCTGCAAAAGATACTTGACCCCAAGGGACATTACAGAGGGTACCTCAAATCTGAATCTTGCGTTTGTCGCACAATTATTCCATCACAGGAGTGGCCTATCGACAGATACTAAAAAGATGTCCTATGCTGAGATGATGACGGAGGATGTGCAAACATCTAGAGAAGAGAGATGCTTCCGGATGTGGATCAATAGTCTCGGAATTTCTACTCATGTAAATAATCTGTTTGAGGATGTCAGAAATGGATGGATACTTCTAGAAGTGCTAGACAAGATTTTTCCAGGATCGGTTAACTGGAAACACGCGACAAGGCCTCCGATTAAAATGCCATTCAGGAAAGTAGAGAACTGCAATCAGTTGATGAGATTCACAATGCTTCAACTGTTGAAAAATTTGAGATCTCATTCCCAAGGAAAGGAGATCAGTGATGCTGATATCCTGAAATGGGCAAACAGAAAAGTGAAGAGCACTGGCAGAACTTCTCACATAGAGAGTTTCAAGGATAAGAGCTTATCAACTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTAGAGCCTAGGGTTGTCAACTGGAACCTTGTCACCAAGGGTGAAAGTGATGATGAGAAGAAGTTGAATGCCACCTACATAATCAGTGTTGCAAGAAAGCTTGGTTGTTCCATATTTTTGTTACCTGAGGATATTATGGAGGTTAATCAGAAGATGATTCTCACACTTGCAGCCAGTATAATGTATTGGAGCCTGCAACAACAAACTGAAGATGCAGCAGATTCATTTCCTTCACCTGCTGGCACTGCCAGTACCACCACCCCGGAAGCATCCCCGGTTCCTTCGGTCTGCGGTGAAGATGAAAGTTCCTCCATTGGTGGTGAATTCTCCAACTTGAGTGTTGATGATGCCACCTCTGACACAACAGTCTCTTCACAAGTTGAGTCTGATGGTGTTCCTGCACCAGATGAGCTATTATGATTCCACTTTGCAAAGGCTTTCACAGCATAAGATGATGATGGGTCTGAAATGTTTTTGTTATTAGAGCAAAGGGAAGGAAAAAAAAAAAGCTTTTAAGAAACAACTCCACCACGGTTCTCAACCTACAAAAGATGTTCTACGTGTGTAAACCAATATCTAGGATAGATGTGAATAGTCTTGTACAAAAATTTGTTTGTTCTTTGGAGGAAAATGGGAACAGAATAAAAGCCTATGAGAAAAGGAAAGAAATGAAAGAGATCAATAAGGGTTTTTGAAGTGAAGTTTAAACAACAACTCCCTTAGATATTGCTCGATTCTTCTTTTCAAGTAGGTTCCACTATTGAATTTGTATTCTGTTATTCATTACCTTACTGTGGCAACCAATAATATGACGTGTCACACAAAAGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	359916	365804	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007551.1	PF00307.26	CH	238	321	7.50E-13
Glyur000092s00007551.1	PF00307.26	CH	349	415	9.30E-10
Glyur000092s00007551.1	PF00307.26	CH	437	538	2.00E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.896
SRR1783600	control	3.934
SRR1783602	moderate drought stress	4.072
SRR1811619	moderate drought stress	3.905

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.815
DRR006520	Root Summer glycyrrhizin high producing strain	2.787
DRR006521	Root Winter glycyrrhizin high producing strain	1.379
DRR006522	Root Winter glycyrrhizin high producing strain	1.381
DRR006523	Root Summer glycyrrhizin low producing strain	4.174
DRR006524	Root Summer glycyrrhizin low producing strain	4.235
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.771
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.857

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.649
SRR2868004	Drought Stress (root)	4.946
SRR2967015	Control (root)	5.427

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.769
SRR9715740	Leaf	20.030
SRR9715741	Leaf	17.104
SRR9715739	Root	0.531
SRR9715742	Root	1.685
SRR9715743	Root	1.656

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.310
SRR8749028	MeJA induced 9h	7.589
SRR8749029	MeJA induced 9h	3.011
SRR8749030	Uninduced	2.556
SRR8749031	Uninduced	0.429
SRR8749032	Uninduced	0.515

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.181
SRR8400027	Control - Root	6.769