Gene detail

Gene detail information of Glyur000092s00007546

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50590.1	2.00E-110	RmlC-like cupins superfamily protein
NR	KHN43861.1	0	Pirin-like protein [Glycine soja]
COG	YP_008838053.1	1.00E-71	pirin [Pandoraea pnomenusa 3kgm]
Swissprot	tr\|Q9SEE4\|PIRL_SOLLC	9.00E-140	Pirin-like protein
trEMBL	tr\|I1JJF8\|I1JJF8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G46600.1}

Sequence

Transcript Sequence

>Glyur000092s00007546.1
CAAAAANATACACTACAACTTTTTTTATTCTCCCTTCTTCATCTCATTCTCACTTGCTTCATATTCATAAAATGCCAAACCAAGAGATTAGCAGTTACATTAAAGAACCTCGTCTTGTAGCTAGGAAGTTCTTGGCCAAACCTCAACATGAAGGTGTTGGTGCTGTTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGCACTTTGATCCTTTCCTTGTCTTGGATGAATTCTCAGTTGCTGCTCCTGCTGGGTTTCCTGATCATCCACATAGAGTAATCTCCTCTGCTGAACTTCTGACTCCCCTGCTTCTTCCTCCTTGTGGTTTTGAGACAGTCACATACATGTTGCAGGGAGCTATAACACATGAAGATTTTGAAGGGCACAAGGGAACAATTGAAGCTGGTGACTTGCAATGGATGACTGCTGGGAGAGGGATAGTGCACTCAGAAATGCCTGCTGCTCAAGGAGTCCAAAAGGGTCTGCAGCTTTGGATCAACCTTGCTTCCCAACACAANATGATTGAACCAAGGTATCAAGAAATATTGAGCAAGGACATAGCAGAAGCTATGAAAGATGGTGTCAAGGTTAGAGTTATAGCAGGGGAAGCTCTTGGGATAAAGTCTCCAATCTACACAAGGACCCCAACCNTGTACTTGGACTTTTCCCTTAAACCTGGAGCACACTTGCAACANCTCATACCAAAATCTTGGAATGCTTTTGTGTACATCTTGGAAGGAGAGGGTGTTTTTGGAAACCAAAAATCTCAGCNTGTAACCCCTCACCATATTCTTCTACTTGGTAGTGGGGACGGTCTAGAGGCATGGAACAAGTCTTCTAAGCCACTTAGGTTCATTTTGGTTGGAGGTGAACCATTGGGGGAACCAGTGGTGCAACTTGGACCCTTTGTGATGAACACTGAAGAAGNGATTGACCAAACCGTTGATGATTTTGAGAACTATACCAACGGATTTGAGAAAGCAAGACATTGGAGGTCTGAAAGCCAGCTAGTCTAGACTTTTGATTTTATTTTAATGTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	330979	334326	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007546.1	PF02678.11	Pirin	85	142	4.30E-24
Glyur000092s00007546.1	PF05726.8	Pirin_C	195	299	1.70E-31
Glyur000092s00007546.2	PF02678.11	Pirin	32	126	2.30E-34
Glyur000092s00007546.2	PF05726.8	Pirin_C	179	283	1.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.456
SRR1783600	control	0.457
SRR1783602	moderate drought stress	0.687
SRR1811619	moderate drought stress	0.612

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.113
DRR006520	Root Summer glycyrrhizin high producing strain	11.162
DRR006521	Root Winter glycyrrhizin high producing strain	0.285
DRR006522	Root Winter glycyrrhizin high producing strain	0.313
DRR006523	Root Summer glycyrrhizin low producing strain	18.599
DRR006524	Root Summer glycyrrhizin low producing strain	18.389
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.358
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.760

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.561
SRR2868004	Drought Stress (root)	86.927
SRR2967015	Control (root)	16.811

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.138
SRR9715740	Leaf	118.330
SRR9715741	Leaf	64.340
SRR9715739	Root	0.602
SRR9715742	Root	6.491
SRR9715743	Root	5.410

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.091
SRR8749028	MeJA induced 9h	30.100
SRR8749029	MeJA induced 9h	35.430
SRR8749030	Uninduced	255.977
SRR8749031	Uninduced	132.727
SRR8749032	Uninduced	93.156

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.258
SRR8400027	Control - Root	6.267