Gene detail

Gene detail information of Glyur000092s00007541.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53320.1	4.00E-57	Leucine-rich repeat protein kinase family protein
NR	XP_006575703.1	0	PREDICTED: probable inactive receptor kinase At2g26730-like [Glycine max]
COG	YP_284821.1	2.00E-10	protein kinase:GAF [Dechloromonas aromatica RCB]
Swissprot	tr\|Q9FK10\|Y5332_ARATH	5.00E-65	Probable inactive receptor kinase At5g53320 (Precursor)
trEMBL	tr\|K7KBK1\|K7KBK1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G46661.1}

Sequence

Transcript Sequence

>Glyur000092s00007541.1
ATGCAGGGCACACTATATTTTGCTGTGTTTCTAAGGAGACTGGTTTGCTTTTCTGTCCTTTATATTGCTTTCTTTGTCACTGTCTGTAAAGGAGGTGAGTCACCGGAGTCTGTGTCTTTCTTCAATTTCCTTAGTGCTGTTGATCCCAATAATGTACTTAACATAAGCCGGAATAACATTGGGTCATCACATCCATGCTTATTGGTCAAGTTGAATGGTACTATAAGATGTAACTCAAATAATGTTACCAACAACATTGTAGAGATAAGGCTTGAGAACTTGAACCTTAGTGGCACATTCGATGCAGATTCCCTATGCAGGCTCCAAAACCTGAGGGTGGTTAGTTTAGCTAAGAATAACATCAAGGGCACTATTCCAAGCTCAATTTTGCATTGTAGAAGATTGGTGTACTTAAATGTAACCAGTAATCAATTGAGTGGTAGGCTACCAATTAAGGCCTTAACGAGATTGAAATATCTTAAGAACTTGGACATATCTAACAACAATTTTTCTGGTATGGTCCCTAGCAGTACCAGTAGACAAGAATATAGGCACCCCTTTACTCCAATTAAGTTAGAAAGCAAAGGTGTGAGAGTGTGGAAAGAGGTAAGTGATGATCCAAACACAATACAACCAGCGCCAGGCATATCTTATCCTGCCAAACAACCACCATGGTATTCACGCATAGAAGTCTTGGTGGGGTTGGTTTTGGGAATTGGATTGCTTTTGGCATCCATCTACATTGTGGTCAAGAAGTTACCCAAATTAATGGAAGAGGGAAAGGTGGGGATGATGAAAAGAAGCCAAGTTGTGTCTCCCCTAGAAAAGCCTAAAACTCATGGGGTGAAATTGAAAGGAGGGGATTCAGAGCTTGTGTTCTTTGTTGAAGAGGATCATGAAAGGTTCACATTGGAGGACCTACTTAGAGCCAAAGCTGACTTGAGAAGTGAGAGCTTTTGTAGCAGCCTATACAAGGTGAAACTAGAGAACAATGTGCAATATGCTGTCAAAAGATTGAAGAATCTGCAGGTATCTTCTGATGAATTTGGTGAGACACTAAAGCAGATCAGTAACGTGAAACATCCAAATATCCTCCCCCTTGTTGGTTACCGTTCTACCAGTGAAGAAAAACTCATCATTTACAAATATCAAAGCAATGGAAGTTTGCTTAATCTTTTAAACGCATGTGGAATTGCAAGGGGTTTGGCCTTCATATTCAGGAAGTTGGATGGAAAGGAGGTAATTCCTCATGGGAACCTCAAGCTATCAAACATCCTTCTTGATGACAAGAATGAACCACTGATAAGTGATCATGGGCTATCAAAATTCTTTGACCCAAATAGAGGCTTCCTCTTTTCCTCTCAGGGATACACAGCTCCTGAAAAGAGCCTAACAGAAAAGGGTGATGTATACAGCTTTGGGGTGATTCTATTGGAACTACTAACAGGAAAAAGCATAGAAGTGAGTGGAATAGACCTTGCTAGATGGGTAAGGTCAATGGTGAGGGAGGAATGGACTGGTGAGGTGTTTGACAAGGAGGTGAGGGAGAATGAGCATCAGGGTGCATTCCCTTTGCTGAATATAGCACTCATGTGTGTGTCACGTTTCCAAGAGAATAGGCCAACCAGTGGAGAAGTGTTGGAGAAGATGGAGGAGGTGATGGATTCACATGAACAACAACAGCAGGAACATTCTGCTTCTAAATGCTTTTCTCATGGTGGATCCAACCAAGAATGTTGTTCACTTCATCAGATCATACCTGACACATGGGATTCTCCTGGATCAAATTATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	298176	300565	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007541.1	PF12799.2	LRR_4	110	146	1.60E-06
Glyur000092s00007541.1	PF00069.20	Pkinase	323	548	1.70E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.020
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.127
SRR1811619	moderate drought stress	0.169

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.007
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.163
SRR2868004	Drought Stress (root)	0.514
SRR2967015	Control (root)	0.215

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.016
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.028

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.037
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.030
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.036

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.012
SRR8400027	Control - Root	0.010