Gene detail

Gene detail information of Glyur000092s00007536

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48150.2	5.00E-164	GRAS family transcription factor
NR	KHN23866.1	0	Scarecrow-like protein 5 [Glycine soja]
Swissprot	tr\|Q9LDL7\|PAT1_ARATH	0	Scarecrow-like transcription factor PAT1
trEMBL	tr\|I1M6J1\|I1M6J1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G01960.1}

Sequence

Transcript Sequence

>Glyur000092s00007536.1
ATGTCATATGGCTCCGGCCAGTTCAGGGTTGAGCCTGTACAAAATCTGGAGTCATGTTTCTTTATGCCAAATGAGAACCTAGACAACTACTCATCCTCTGATAACAGTAGCCATTCAACCTACCCTTCNGTTCATACTTTAGAACAATTTTGCACCCTTGAATCTTCTATAGACAACAGCTTCCCTTGTCAAAACTCTCCATCTGCTGCCAGTTTCTCACCTAACAATAGCCCCGTCTCAAAACATCAGTCGAAATCTTATGTGTTGAGATCACAGCATTCTCTTGAAATTATCAATGANTCACTAGAAACCGAATCTTGTTTGACACATAACCATGATGACCTGCAGCACAAGATAAGAGAGCTCGAAAATGCTATGCTAGGAAATGATGCAGATATTATGGACATATATGATGATATAGTAATTCCAGAAGAATATGATTCATTTTGGTTAGAGGCAGAGAAGTGGAACAAAATGATGGAGATGTTATCTAGAGGGGATCTGAAAGAGATGCTTTATACTTGTGCAAAAGCAATGGCGGCCAATGATATGGAGACAACCGAATGGTTGATGTCAGAGTTGCGTAAAATNGTGTCGGTTTCAGGCAATCCGATCCAAAGGCTGGGAGCATACTTGCTGGAGGCTCTTGTTGCAAGGAGGGCCTGTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCCACTAGTAATGAACTCCTTTCATACATGCATGTACTTTATGAAATTTGCCCATACCTCAAGTTTGGGTACATGTCAGCAAATGGAGCAATTGCTGAAGCTGTGAAGGGGGAAAGTGAAGTCCACATAATTGATTTTCAGATCAACCAAGGAATCCAATGGGTAAGCCTTATCCAAAGTCTTGCTAGCAGACCTGGAGGGCCACCAAAGATTAGAATAACAGGTGTTGATGACTCCACTTCAGCTTATGCTAGGGGAGGAGGGCTTGATATTGTTGGAGAAAGGTTATTAGGACTTGCACAATCATATAATATACCCTTTGAGTTCAATGCTATAGTGGCTGCTCCTACTGAGGTGCAACTCAAAGACCTTGAACTTCGACCCAGTGAGGCTATTGCAGTGAATTTNGCCATGATGCTGCACCATGTACCGGATGAAAGTGTAGACAGTCAGAATAACCGCGACCGGTTGTTGAGATTGGCCAAGTGCTTGTCTCCTAAGGTAGTNACTCTGGTTGAACAAGAATCAAATACCAACAACCTCCCATTCGTCCCACGTTTCGTTGAGACGATGAACTACTACTTGGCNGTTTTTGAAGCAATCGATGTCGCTCTTCCAAGGGAGCACAGAGAAAGGATTAATGCGGAACAGCATTGTTTGGCGCGAGAAGTTGTCAACTTGGTAGCATGTGAAGGAGCAGAAAGAGTGGAGCGTCACGAGCTTTTGAAGAAGTGGAGATCACGTTNTACAATGGCCGGATTCACACCTTATCCACTGAGCTCCTTGACTAAAAGTTCAATAAAGAATCTTCTAGAAAGCTATCAAGGACATTACACTCTAGGAGAGAGAGACAGTGCTCTCTACCTTTGTTGGATGAATCAANTTCTTGTTACCTCTTGTGCTTGGAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	270204	271820	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007536.1	PF03514.9	GRAS	168	538	1.90E-128

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.255
SRR1783600	control	18.047
SRR1783602	moderate drought stress	27.958
SRR1811619	moderate drought stress	27.763

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.342
DRR006520	Root Summer glycyrrhizin high producing strain	17.620
DRR006521	Root Winter glycyrrhizin high producing strain	69.712
DRR006522	Root Winter glycyrrhizin high producing strain	66.974
DRR006523	Root Summer glycyrrhizin low producing strain	15.994
DRR006524	Root Summer glycyrrhizin low producing strain	16.083
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.810
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.473

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.114
SRR2868004	Drought Stress (root)	55.811
SRR2967015	Control (root)	36.399

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.752
SRR9715740	Leaf	29.006
SRR9715741	Leaf	35.103
SRR9715739	Root	4.950
SRR9715742	Root	13.699
SRR9715743	Root	13.028

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.980
SRR8749028	MeJA induced 9h	12.227
SRR8749029	MeJA induced 9h	13.935
SRR8749030	Uninduced	16.112
SRR8749031	Uninduced	29.987
SRR8749032	Uninduced	22.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.557
SRR8400027	Control - Root	15.317