Gene detail

Gene detail information of Glyur000092s00007532

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G05160.1	2.00E-107	CCCH-type zinc fingerfamily protein with RNA-binding domain
NR	AET00677.2	0	RNA-binding domain CCCH-type zinc finger protein [Medicago truncatula]
Swissprot	tr\|Q9SJ41\|C3H18_ARATH	4.00E-127	Zinc finger CCCH domain-containing protein 18
trEMBL	tr\|G7K4G1\|G7K4G1_MEDTR	0	RNA-binding domain CCCH-type zinc finger protein {ECO:0000313\|EMBL:AET00677.2}

Sequence

Transcript Sequence

>Glyur000092s00007532.1
CTAAACTCAAAATAGAGACAGAAGAACCCAAGAGATAGATACACAGGATGACGTGCCGACATGACTNTGCAGTTCAGCAGTTGAAGAGTTTTGAGTGACAGGATAAGAGTTACTTATGGATATTTCAGACTACACAAGGATTGTCTTTGAGAAAATTCAGAAATTTGAGCCTGAGCATGCTACAAAGATAATTGGCTACCTCCTTTTGCAAGACCATGGGGAGCAAGAGATTGCTAGATTGGCTTCTTGCCCTGACCATTTCATCCGCGAGGTGGCATTCAAGGCGAAAACCNATATTCAAAGGTTGGCTGTTAAATCAGCCATGATTCCAACTCCACNTAGTGTCAACCCTCAACAAGGTTTAAGCCATTTTTCAGTAATCTCCCCTAGAACACCTGCTTCACCACCAAGCTTTCATGTTCCCTCTCACTATTGGGATCCNCAGCCTGCTAGCAATGCCAATCCAGAATATATGGGAATGAATTACTTGGATTCTATCACAGAACTTCAGAATCAGACACAATTGTTGAGTTTGGAGCATCATATAGATCCTGTGAATACCGGAACTGGGAGGATTGTCAATGAGTACTATGGCTTAGATGCTTCTGCAGTCAATTTGGGTGGTGGAGAAGCCGGCAGAAGGTTTTCAAGCCCGNCTGAATTTCCAAAGATCTGTCATTATTTCAATAGAGGGTACTGTAGGCATGGAAGTAGCTGTAGATACTATCATGGCCAAGTTCCCCCTGAGAGCATCTCTCATATGCATGGAAATGATGCTAGTAATGAGGAACAAGTGTTTTCACCNGGGTCACTAGCGCAGTTAGAGTCGGAAATTATCGAGCTTCTTAAGCAGAGAAGAGGGAATCCAATGTCAATTGCTTCCCTGCCAATGGCATACTATGATAAATATAAAAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGCCAGAGACATGGTAAGTCNGGCTATAGTTTGACAAGGCTTCTCGTGCGACTGAATGGTAGTATTCNGCTAATAGACAGGCCTCATGGGCAGCATGCAGTGGTTCTGGCAGAAGATGCTCCAAAATACGTTAGAAAGGGAGATTCTGCTNAAAATATTAGCGCCTCGCGACAAATATATTTGACTTTTCCAGCTGATAGTACTTTCACAGAAGAGGATGTCTCGAATTACTTCAACACATTTGGGTGTGTTGAAGATGTTAGGATTCCATGCCAGCAGAAAAGGATGTTTGGATTTGTAACATTTGTTGATCCTGAAACTGTTAAAACTATTTTGGACAAGGGGAATCCCCATTATGTTCGCGGGTCTCGCGTGCTTGTGAAACAATACCGGGAGAAGGCAAAGGCTATTGAAAGGAAGTACCAAGAGAGAATGGATCACTCTNTTTGTTGTTCGCCGCACTTCGTGGACATGGACTCTGAGTTTAACTCAATTCCAAGAAGTTATGGAAACCATAGATCTTTAAGGAGACAGCTGATTGAAGAGCAAGAGCAAGCCCTTGAATTTGAGAGGAGACGCCTTGCGCAGATGCAGTTTGCGCAAAAACCTTTGTCCAGTTCACCTCATTTTGGCTTCTCCATGGATGAGTTAAGAGTCTCAAATGATCATTTCAATTTCCAGCCAGCAGAATCTTTAAGTTCTGCGCTGAATGACAATCCCAGACATCCAGACACTGATTCCTCNGACGAGAACAGCAATGAAGGACTGAATCTCCCGGACAGTCCATTTGCATTTCCAACAGAAAGTGATTTTTAGGCAGTCATATAGTTTCAGAAAAAACATACAGGAGAGAAGTATAGAGTTAGAAGCCAAAGGCAGCAGCTTTCTTTTGATACACAATACAGTTCTTCTATTGAACTATTTTCTCAAATCAACTAGCTCAGTCAGCATTATAGTCAAAGTCTCTGGCAAGTACATACAAGCTGAAGAAGGAACATTGGAAGAATTAACACAAGTTTAATGATACATGTAAGAAGGTTACTATAGTTTTATAATTACAGAAATGTGGCAAAAGGTTTGGTTTTTAGAACATCATGTAGTTAGGAGTTTTATGAAAAGAACTAGGATCCACAGTTTTCATTAGAGTTTGAAGAACCTTTTAGAATCTGTGGTTTTATAACTATGAAGAACAACTTCAATAATGGTTTATAACTTCATATTAAAGTCCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	252587	257733	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007532.1	PF00642.19	zf-CCCH	185	207	9.80E-05
Glyur000092s00007532.1	PF12872.2	OST-HTH	232	312	7.80E-09
Glyur000092s00007532.1	PF14259.1	RRM_6	344	402	1.60E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.680
SRR1783600	control	0.668
SRR1783602	moderate drought stress	0.877
SRR1811619	moderate drought stress	0.898

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.843
DRR006520	Root Summer glycyrrhizin high producing strain	0.880
DRR006521	Root Winter glycyrrhizin high producing strain	0.972
DRR006522	Root Winter glycyrrhizin high producing strain	1.048
DRR006523	Root Summer glycyrrhizin low producing strain	1.927
DRR006524	Root Summer glycyrrhizin low producing strain	1.925
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.989
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.107

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.949
SRR2868004	Drought Stress (root)	3.938
SRR2967015	Control (root)	4.558

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.046
SRR9715740	Leaf	69.566
SRR9715741	Leaf	46.796
SRR9715739	Root	0.426
SRR9715742	Root	0.878
SRR9715743	Root	1.227

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.648
SRR8749028	MeJA induced 9h	1.692
SRR8749029	MeJA induced 9h	3.402
SRR8749030	Uninduced	0.913
SRR8749031	Uninduced	0.469
SRR8749032	Uninduced	2.578

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.581
SRR8400027	Control - Root	4.004