Gene detail

Gene detail information of Glyur000092s00007529

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13080.1	0	multidrug resistance-associated protein 3
NR	XP_003545103.1	0	PREDICTED: ABC transporter C family member 3-like [Glycine max]
COG	NP_969385.1	8.00E-165	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q9LK64\|AB3C_ARATH	0	ABC transporter C family member 3
trEMBL	tr\|I1M6I4\|I1M6I4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G01900.1}

Sequence

Transcript Sequence

>Glyur000092s00007529.1
ATGTCGTTTGTTTTCTCATCCCTTCCCCTCTTCATGCACCCTGCAGCCACTGATTTTCTCCTCAAACCCATTTTCCTTCATGGCTTATCTAGCCTCCTCCACCTACTCTTATTGGTGGCGGTTTTGGTCTCATGGGTTTGGAACAAAATCACAACTTGTTCTGTGAACGACTCTAATAAGGAGAAACTCAATAACCCCTTGTTTACGGTCACCAAGTTCTGTTCTCTCGGTGTTTCAGCTTTCAATCTTGTTCTCTCCCTCTACAATTACTTCTACTGGTATAGAAGTGGTTGGTCAGAAGAAAAGCTCGTGACCCTTTTGGATTTGGCGNTCAAAACGGTTGCTTGGGGCGTCGTTTATGTTTGCTTGCACAAGGGGTTCTTCAGTAGAAGAAGAAGAAGGTTCCCATTCTTCTTCACAGCTTGGTGCGCCTTCTATCTCTTTGCTTCCTGTTATATCTTCGTGGTGGACATTGTTGTTCTCTATGAGAAACACATTGCCTTAACCGCTCAGCGCATAGTTTCTGATGTCGTATCAGCTTGTGTGGGTTCGTTCTTCTGTTACGTGGGGTATTGTGTGAAAAACGAGGGTGAAGATAGTAATATTCTTCAAGAACCTCTATTGAATGGTGATAGTGCACACGTGTCAAAGGAGACCAGAGGGAGTGACACTGTTACCCCTTTCTCTAATGCTGGGATTCTCAGCATTCTCACNTTCAGTTGGGTGGGTCCCCTTGTAGCTTTTGGCAATAAGAAAACCTTAGACCTTGAGGATGTTCCTCTGTTGGATAGTGGAGATAGTGTAGTTGGGGCTTTNCCAACTTTCAGAGATAAAGTTGAGGCTGATTGTGGTGCAATCAATAGAGTAACCACACTTAAGCTAGTGAAGTCATTGATAATCTCAGCTTGGAAAGAGATTCTCTTTACAGCTTTTCTTGCTTTGGTGAACACGTTGGCTTCTTATGTTGGCCCTTATCTTATTGACGCTTTTGTTCAATACCTTGGTGGACAAAGGCTATATGAAAACCAGGGCTATGTGTTGGTTTCTGCNTTTTTCTTTGCCAAGCTTGTGGAGTGCCTTTCACAAAGGCATTGGTTCTTTAGGTTGCAGCAGATCGGAATTCGAATCCGAGCACTGCTTGTGACCATGATATACAACAAAGCCTTGACCCTTTCGTGTCAATCGAAGCAGGGCCAGACTTCTGGGGAAATAATCAATTTCATGACTGTTGATGCTGAAAGAGTTGGGGTGTTCAGTTGGTACTTGCATGATTTGTGGCTGGTGGTNCTGCAGGTTTCATTAGCCTTGTTGATCCTGTATAAGAACCTCGGGCTTGCTTCAATTGCTACTTTTGTTGCAACTGTCATTGTTATGTTGGCAAATGTTCCCTTGGGATCATTGCTAGAGAAGTTTCAAAATAAGTTGATGAAGTCAAAAGATACGAGAATGAAGAGCACATCTGAGATTTTGAGGAACATGAGGATCCTCAAACTACAAGGATGGGAAATGAAGTTTCTGTCTAAGATAACTGAGCTCAGGAACACTGAGCAAGGCTGGTTAAGGAAATTTGTTTACACTTCAGCCATAACCACCTTTGTGTTTTGGGGTGCCCCCACATTTGTATCTGTGGTCACTTTTGGTACTTGTATGCTTATAGGGATCCCACTTGAATCAGGGAAGATCTTGTCCGCGCTCGCAACATTCCGGATTCTTCAAGAGCCTATTTATAGCCTTCCAGACACGATTTCAATGATAGCACAAACTAAAGTCTCGCTTGATAGGATCGCATCATTCCTTCNTCTTGATGACTTGCAGTCTGATGTTGTGGAAAGGCTTCCCCGGGATAGTTCTGATACAGCAATTGAAGTAGTCGATGGAAACTTTTCTTGGGATATATCTTCCCGGAATCCAACGTTGCAAAACATAAACCTCAGGGTTTTTCATGGGATGAGGGTTGCTGTTTGTGGTACTGTTGGGTCAGGCAAGTCTACTTTGCTTTCTTGTGTGTTGGGAGAAGTACCAAAGATATCAGGTGTCCTCAAGGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGGCAAGATAGAGGATAATATATTGTTTGGTAGACACATGGATAGGGAAAGGTATGAGAAGGTACTTGAAGCCTGTTCCCTGAAGAAGGATCTGGAGCTTTTGTCATTTGGTGATCAGACAGTTATAGGAGAGCGTGGAATAAATCTGAGTGGTGGACAGAAACAAAGAATACAAATTGCACGTGCTCTTTACCAAGATGCTGNTATATATCTATTTGATGATCCTTTCAGTGCTGTGGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGCTGGGTCTTTTAGGTTCAAAAACAGTGGTTTATGTTACTCATCAAGTAGAGTTCTTACCTGCAGCTGACCTTATATTGGTCATGAAAGATGGGAAAATTACTCAGTGTGGAAAGTATGCCGATCTGCTTAACAGTGGGACTGATTTTATGGAACTTGTTGGTGCACACAGAAAAGCTTTGTCTGCACTTGATTCATTGGATGGAGGGACAGTATCTAATGATGAAATAAGTACCCTGGATCAAGATGTAGATGTCTTTGGCACTGATGGTGTTAAAGAAAAAGAGGCAAATAAAGATGAGCAAAATGGTAAAGCAGATGACAAAGGTGAACCAAAAGGTCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGGTTTTCAGTGTACTGGAACTATATCACAACTGCATATGGAGGAGCTCTTGTACCGTTCATATTATTGGCCCAGATTCTTTTCCAAGCTCTTCAAATCGGAAGCAACTATTGGATGGCTTGGGCAACTCCCATCTCATCAGATGTGGATCCACCTGTTGGAGGATCAACTCTTATAGAAGTCTATGTTGGTTTGGCCATTGGAAGTGCTTTCTGCATCCTTGCCAGAGCAATATTGCTCGCTACAGTTGGTTATAAGACAGCCACTATACTCTTCAATAAAATGCACTTATGCATTTTCCGTGCCCCGATGTCATTTTTTGATTCCACTCCAAGTGGNAGAATCCTTAACAGAGCTTCTACTGACCAAAGCGCGGTGGATACAGATATTCCTTATCAAATTGGCTCATTTGCCTTCTCCATGATCCAGCTACTGGGAATTATAGCAGTGATGTCTCAGGTTGCATGGCAAGTTTTCATTGTCTTTATACCTGTGATAGGAGTCAGCATTTGGTATCAGCAATATTATTTACCATCGGCCCGAGAACTATCACGTTTAGTTGGAGTATGCAAGGCTCCGATCATTCAACACTTNGCTGAAACCATTTCTGGTACTTCAACCATCAGAAGCTTTGATCAACAGTCAAGATTTCAGGAAACAAATATGAACCTGACTGATGGGTATTCTCGGCCCAAGTTCAACAGTGCTGCTGCTATGGAATGGTTATGCATCCGCTTAGATATGTTGTCTTCTATCACATTTGCCTTTTCCTTGATATTCTTGATATCTATTCCACAGGGAATCATAGATCCAGGCATTGCTGGTTTAGCTGTTACCTACGGACTTAATTTAAATATGATACAAGCATGGGTGATATGGAATCTTTGCAACTTGGAGAACAAAATTATATCAGTAGAAAGAATACTTCAGTATACTTCCATTCCTAGTGAGCCTCCCCTTGCTGTAGAAGAAAATCGGCCAGATCCTTCTTGGCCCTCACATGGCGAAGTTGATATCNGGGACTTGCAGGTTCGATATGCTCCACATCTTCCGCTTGTGCTGCGTGGCCTTACATGTACGTTCCGTGGAGGACTGAAAACTGGCATTGTTGGGAGAACAGGAAGCGGTAAATCGACTCTCATACAAACACTTTTCCGAATCGTTGAGCCTANTGCCGGGCAAGTCATCATCGATGGCATCGACATCTCTTCAATCGGGCTGCACGATTTGAGGTCTAGGCTAAGCATTATTCCGCAGGAGCCAACCATGTTTGAGGGGACAGTGAGAAACAATCTGGACCCCTTAGAAGAGTACACTGATGAACAAATATGGGAGGCCCTGGATAAGTGTCAACTGGGAGATGAAGTTAGGAAGAAAGAAGGAAAGCTCGACTCTACAGTTAGTGAAAATGGTGAGAATTGGAGCATGGGTCAGAGGCAGTTGGTATGCCTTGGTAGGGTGCTGCTTAAGAAAAGCAAGGTTTTGGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAGCATTTCTCTGACTCTACGGTCATTACCATTGCGCATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTCCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCAACAACATTGCTAGAGGATAAGTCATCATCTTTTGCTCAGCTTGTTGCNGAGTATACCATGAGATCCAACTCCAGTTTTGAGAAATCTGTTGATCTCTGATTGAAATCTACGGAAGCAAAAGTTTCATCACAAGTTTCTTGATGATGGCGAAAATCTGTGGGGGTGGGGGGGATAACAGTTTCTTATCAATGGGGTCTGTAATTCTTTTGTCATTGAAGCATGTTTAATAGAAAATGTAACATATAAAATAAGGCTTTTGATGTCCAACTTCNCCTTTTTTGCAAGGCTGAAGGAAGTGTAGTTATTAGAGGGAAAAGATTGCAAAATGAAANAGAAAAATCTAATTACTTTAGATGC

Protein Sequence

>Glyur000092s00007529.1
MSFVFSSLPLFMHPAATDFLLKPIFLHGLSSLLHLLLLVAVLVSWVWNKITTCSVNDSNKEKLNNPLFTVTKFCSLGVSAFNLVLSLYNYFYWYRSGWSEEKLVTLLDLAXKTVAWGVVYVCLHKGFFSRRRRRFPFFFTAWCAFYLFASCYIFVVDIVVLYEKHIALTAQRIVSDVVSACVGSFFCYVGYCVKNEGEDSNILQEPLLNGDSAHVSKETRGSDTVTPFSNAGILSILTFSWVGPLVAFGNKKTLDLEDVPLLDSGDSVVGAXPTFRDKVEADCGAINRVTTLKLVKSLIISAWKEILFTAFLALVNTLASYVGPYLIDAFVQYLGGQRLYENQGYVLVSAFFFAKLVECLSQRHWFFRLQQIGIRIRALLVTMIYNKALTLSCQSKQGQTSGEIINFMTVDAERVGVFSWYLHDLWLVVLQVSLALLILYKNLGLASIATFVATVIVMLANVPLGSLLEKFQNKLMKSKDTRMKSTSEILRNMRILKLQGWEMKFLSKITELRNTEQGWLRKFVYTSAITTFVFWGAPTFVSVVTFGTCMLIGIPLESGKILSALATFRILQEPIYSLPDTISMIAQTKVSLDRIASFLXLDDLQSDVVERLPRDSSDTAIEVVDGNFSWDISSRNPTLQNINLRVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKIEDNILFGRHMDRERYEKVLEACSLKKDLELLSFGDQTVIGERGINLSGGQKQRIQIARALYQDAXIYLFDDPFSAVDAHTGSHLFKECLLGLLGSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYADLLNSGTDFMELVGAHRKALSALDSLDGGTVSNDEISTLDQDVDVFGTDGVKEKEANKDEQNGKADDKGEPKGQLVQEEEREKGKVGFSVYWNYITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISSDVDPPVGGSTLIEVYVGLAIGSAFCILARAILLATVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRASTDQSAVDTDIPYQIGSFAFSMIQLLGIIAVMSQVAWQVFIVFIPVIGVSIWYQQYYLPSARELSRLVGVCKAPIIQHXAETISGTSTIRSFDQQSRFQETNMNLTDGYSRPKFNSAAAMEWLCIRLDMLSSITFAFSLIFLISIPQGIIDPGIAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERILQYTSIPSEPPLAVEENRPDPSWPSHGEVDIXDLQVRYAPHLPLVLRGLTCTFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPXAGQVIIDGIDISSIGLHDLRSRLSIIPQEPTMFEGTVRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSTVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPTTLLEDKSSSFAQLVAEYTMRSNSSFEKSVDL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	226177	232059	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007529.1	PF00664.18	ABC_membrane	309	574	4.60E-24
Glyur000092s00007529.1	PF00005.22	ABC_tran	639	773	8.80E-19
Glyur000092s00007529.1	PF00664.18	ABC_membrane	938	1200	1.60E-27
Glyur000092s00007529.1	PF00005.22	ABC_tran	1270	1417	3.60E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.440
SRR1783600	control	4.385
SRR1783602	moderate drought stress	0.452
SRR1811619	moderate drought stress	0.478

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.204
DRR006520	Root Summer glycyrrhizin high producing strain	0.203
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.360
DRR006524	Root Summer glycyrrhizin low producing strain	1.404
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.381
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.331

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.278
SRR2868004	Drought Stress (root)	30.010
SRR2967015	Control (root)	17.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	89.125
SRR9715740	Leaf	79.451
SRR9715741	Leaf	152.985
SRR9715739	Root	2.002
SRR9715742	Root	32.077
SRR9715743	Root	26.722

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.825
SRR8749028	MeJA induced 9h	80.427
SRR8749029	MeJA induced 9h	68.651
SRR8749030	Uninduced	20.652
SRR8749031	Uninduced	24.312
SRR8749032	Uninduced	30.858

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.104
SRR8400027	Control - Root	7.875