Gene detail

Gene detail information of Glyur000092s00007523

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26320.1	4.00E-109	Zinc-binding dehydrogenase family protein
NR	XP_004497780.1	0	PREDICTED: NADP-dependent alkenal double bond reductase P1-like [Cicer arietinum]
COG	YP_004271883.1	4.00E-69	2-alkenal reductase [Planctomyces brasiliensis DSM 5305]
Swissprot	tr\|Q9SLN8\|DBR_TOBAC	6.00E-139	2-alkenal reductase (NADP(+)-dependent)
trEMBL	tr\|W9RFD5\|W9RFD5_9ROSA	7.00E-153	NADP-dependent alkenal double bond reductase P1 {ECO:0000313\|EMBL:EXB88293.1}

Sequence

Transcript Sequence

>Glyur000092s00007523.1
TAGGAACATAAATAAAGGTGCTGTGAAGGGAAATCAAGATCGTTTCAAAAACTGAAAAATGGAACAAGTGCAAGAGCTAGTGAGCAACAAACAAGTTCTGGCTTCAGCCAACATAACTGGCAATCCAAAACAAACAGACATGCATTTGAAACTACCATAAGCTTACAACTTCCTCCAGAGGCTTCAGAAGCTGTGTTGGTTAAGAACCTCTATTTATCNTGTGATCCTTACATGAGAGGAACCAAGAGAAAAGACAGAACTCGCCTCTTTTATTCCTTCTCTCCTGATTCACCAATAATTGGATATGGAGTATGTAAAGTGTTGGATTCTAAACACCCNGACTTCAAAAAAGGAGACTTGGTGTGGGGAGTCACCAAATGGGAAGAGTATAGCATCATCACAAACACTGATAGCCTCATCAAAATTGAGCACACTGATGTACCTCTTTCCTATTATACTGGACTTCTTGGTATGCCTGGTATGACTGCTTATGCTGGTTTCTATGAGGTTGGGGTCCCTAAAAAGGGAGATTATGTCTTTATATCTTCAGCATTTGGTGCAGTTGGTCAACTTGTTGGGCAGCTAGCCAAATTGATGGGCTGTTATGTTGTAGGAAGTGCAGGAAGTAAATATAAGGTTGAAATTTTGAAGAGTAAGTTTGGGTTTGATGAGGCTTTTAATTACAAGGAGGAACATGACCTGGATGCAACATTGAAGAGGTACTTCCCTGAAGGCATTGACATTTACTTTGACAATGTTGGGGGAGACATGCTTGAGGCAGCACTTGTTAACATGAGAAGGCNGGGTCGAATTGTGGTGGCTGGAATGATCTCACAGTATGATCTGGATGAGCCTCAAGGCATAAAAAACTTGGTGAATATCATATATAAGCAGATCCGAGTAGAAGCCTACACAGTCTACGATTACTATCACCTNTATCCCAAGTTTTTGGATACAATTTTGCCTTATATTAGGGAAGGGAAGATAACATACGTTGAAGACATAGCTAAAGACCTTGAGAGTGGCCCNGCTGCATTGGAAGCAATGTTCACAGGCACTAGTGCTGGCAAACAAGTGGTTTTAGTTGCCAATGAATAATATATACGTTGCCTTCATCTATTATATTTCTAGTATTATGGTATTGGAATTAACCAATCAAGTAAGTGTTGGCAACTTTTTTCTTAGAGATATAATTGATTAGATACTAGCAGTCATAGTAGTTAGTTTGTTACTAGGTTGTGACTTGTGAGCCTATATAAAAGGCTTGATATTATCCTTTTGTATTCACCTTTTCCATTTCAATACAACTCAATTTTTTAGTTTTGTGTATTTTTCTATTTTCTTCTTGGGTTTCTCTTCTTAGGTGAGCCATGTTTTCCAACGGTTTTGCTGTCATTTAGTGTGAAAAGTTGTGAGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	197968	200006	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007523.1	PF00107.21	ADH_zinc_N	110	240	9.80E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.026
SRR1783600	control	0.026
SRR1783602	moderate drought stress	0.134
SRR1811619	moderate drought stress	0.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.608
DRR006520	Root Summer glycyrrhizin high producing strain	0.519
DRR006521	Root Winter glycyrrhizin high producing strain	13.412
DRR006522	Root Winter glycyrrhizin high producing strain	12.867
DRR006523	Root Summer glycyrrhizin low producing strain	0.077
DRR006524	Root Summer glycyrrhizin low producing strain	0.077
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.095
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.081

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.315
SRR2868004	Drought Stress (root)	12.710
SRR2967015	Control (root)	1.897

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.164
SRR9715740	Leaf	0.089
SRR9715741	Leaf	0.357
SRR9715739	Root	0.105
SRR9715742	Root	0.477
SRR9715743	Root	0.254

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.219
SRR8749028	MeJA induced 9h	57.503
SRR8749029	MeJA induced 9h	24.329
SRR8749030	Uninduced	108.835
SRR8749031	Uninduced	351.248
SRR8749032	Uninduced	118.919

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.160
SRR8400027	Control - Root	0.713