Gene detail

Gene detail information of Glyur000092s00007512

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55900.1	8.00E-99	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
NR	XP_007142410.1	0	hypothetical protein PHAVU_008G278100g [Phaseolus vulgaris]
Swissprot	tr\|Q8VYE2\|TIM50_ARATH	9.00E-122	Mitochondrial import inner membrane translocase subunit TIM50 (Precursor)
trEMBL	tr\|V7B9A1\|V7B9A1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW14404.1}

Sequence

Transcript Sequence

>Glyur000092s00007512.1
TCCAGAAGTAGCCTAACCGCCTAAAAAGTCCAAACAGAATAAAAAGGAATAGTGGAATAGCAGGAAGCCAAACAGAGCACATCGACGGCTCTGCAAATCGCAAAAACGCAAAACCCTACTTGAACCCCTAGCTTTCACTGCACACTGGCATTAGCATTGCCATCGTCACAACCATGTCTCTGAGAATTCTCCGATCTCGAGCCNTTTCCGTCGCATCATCGAAGCGATTCCTCTGCACCAATGCAGCTTCCGCTCCTCAACCTTCTCCTCCTTCCGCCGCCTCCCCCAGCCGCTGGAACTTCCTCAAATACGCCGTCGTTGGTGCCATCACCGGAACCACTGCCCTCGCCGGTTACGCCTCCTACGCTTACAGTGTGGACGAAATAGATGAGAAAACGAGGTCGTTACGTGAATCGGCCAAGTATGCTGTAGGTGATGGAGCCACTGCTCTCGACAAATTTCAAGGATTGCTATACTCAACTGCAATGACAGTGCCTGCTAAAGCAGTAGAGTTTTATTTGGATGCAAGAAGGCTAATTGAAGAACAAGTCAGGAGTTATACAGAACCATACACAGACAAGCTCCTTCCAGATTTGCTTCCTCAGGAGCAACATGTGTTTACACTTGTTCTAGATCTCAACGAGACATTGATTCACTATATTTGGACGCGAGATACAGGCTGGCAGACTTTTAAAAGACCTGGAGTTGATGCCTTCTTGGAACATCTAGCTCAGTTCTATGAGATAGTAGTGTATACAGATGAACAAAATATGTTTGTAGACCCTGTTATAGAAAGGCTGGATCCCAAGCATTGCATTAGGTATAGGCTATCAAGGCCAGCTACTAAGTATCAGGATGGGAAACACTATAGAGACCTTTCAAAACTAAACAGGAATCCAGCAAAAGTTCTATATTTTAGTGGNCATGCTTTGGAAAGTTGCCTACAACCTGAGAACTGTGTCCCTATAAGGCCATGGCAGCAGACTGATAAAGATGACACAGCTCTTCTGGATTTTATACCATTTCTTGAGTTTGTTGCCCGTAGTAGTCCGGCTGATATAAGACCAGTGCTACAGTCTTACCAAGGATGTGACATTCCGGCTGAATTCATCAGGCGTTCCAAAGAGCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	157470	160878	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015031 protein transport

cellular_component

GO:0005743 mitochondrial inner membrane

GO:0005744 mitochondrial inner membrane presequence translocase complex

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007512.1	PF03031.13	NIF	150	296	1.30E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.245
SRR1783600	control	18.266
SRR1783602	moderate drought stress	13.780
SRR1811619	moderate drought stress	13.866

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.758
DRR006520	Root Summer glycyrrhizin high producing strain	20.332
DRR006521	Root Winter glycyrrhizin high producing strain	10.738
DRR006522	Root Winter glycyrrhizin high producing strain	10.280
DRR006523	Root Summer glycyrrhizin low producing strain	22.518
DRR006524	Root Summer glycyrrhizin low producing strain	22.945
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.351
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.683

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.718
SRR2868004	Drought Stress (root)	17.557
SRR2967015	Control (root)	13.739

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.217
SRR9715740	Leaf	8.861
SRR9715741	Leaf	6.942
SRR9715739	Root	7.212
SRR9715742	Root	15.290
SRR9715743	Root	12.288

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.596
SRR8749028	MeJA induced 9h	21.171
SRR8749029	MeJA induced 9h	22.352
SRR8749030	Uninduced	3.617
SRR8749031	Uninduced	1.367
SRR8749032	Uninduced	2.316

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.514
SRR8400027	Control - Root	16.970