Gene detail

Gene detail information of Glyur000092s00007509

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55630.2	2.00E-76	Outward rectifying potassium channel protein
NR	XP_004491506.1	2.29E-171	PREDICTED: two-pore potassium channel 1-like isoform X1 [Cicer arietinum]
COG	NP_111507.1	7.00E-08	Kef-type K+ transporter NAD-binding component [Thermoplasma volcanium GSS1]
Swissprot	tr\|Q8LBL1\|KCO1_ARATH	2.00E-110	Two-pore potassium channel 1
trEMBL	tr\|I1JJJ2\|I1JJJ2_SOYBN	2.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G46930.1}

Sequence

Transcript Sequence

>Glyur000092s00007509.1
ATGGCAAGCAATGATGCAATGGAGCCCTTGCTGTTGGGATCACTGGATACTGCATCTCAAAAGGCTAAGTGGAAGTTAAACAAAAGAAGGCTCCTCCGCACTAGAAGTGCCCCTCATGCTGACACAGATCTTGCTCCTCCTGTGACAAATGGCCATGAATCGATTCCCCGTTTCGGGTCCATATTTGGGAATCTACATCCAAGCTTTAAAAAAGTGGCTATATTCCTTGCAGTCTATTTAGGTATAGGGGCTTTAATCTTTTACCTTGTCACGAACCAGATCAAGGGACTGAAAACAGACAAATTCCTTGATGCCGTATACTTTACAATTGTGACAATGACCACTGTTGGATACGGAGACCTTGTGCCCAATAGCGACCTTACGAAACTACTCGCATGCGCTTTTGTTTTCTCCGGAATGGCAGTGATTGGACTAATCCTAAGCAAAGCAGCAGACTACTTGTTTGAGAAACAGGAAGTTTTGCTGGTTAAAGCCATGCACATGCACCAAAAAGTTGGCACAAGTGAGATTTTAAAGGAGATTGAGACCAATAAAACAAGGTACAAATTTATTCTGGTCTTTTTCCTTCTTTTGATTCTCATCGTTGTGGGGACAACTTTCTTGGTCACTGTTGAGGAATTGGATGTCATTGATGCCTTCTACTGTGTTTTCCTCTACATGGCTGAACTAAACACTGAAAACAGACAAAAGGCACTGGTCAAGTGGGTTCTTACAAGGAAAATGACCAATTTAGATTTGGAGGCTGCAGATCTTGATGAGGATGGGCATGTTGGGGCTGTTGAGTTCGTTATTTATAAGCTCAAAGAGATGGGGAAGATTACTCAAGAAGATATATCACTTGTGATGAAGGAGTTTGAGCAGCTTGATGTTGATCAGTCTGGTACACTATCTGTTTCTGATATAAGACAAGCTCAGTCATCCTAGACTAACATTTGTATACACCAAGTTTGTTATAGAGAGAGGGGTTCTCTTTATTGGCCAGTCTCAGATTTTGCAACTTAATGCCTGCACCATGTAGTTTGAAGCCTTCATGTAAGCAATGATAACTGTTACCAGTGTTGTAATTGAGGATTTGATTTCTTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	145325	146782	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007509.1	PF07885.11	Ion_trans_2	74	155	4.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.604
SRR1783600	control	19.176
SRR1783602	moderate drought stress	19.660
SRR1811619	moderate drought stress	18.778

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.122
DRR006520	Root Summer glycyrrhizin high producing strain	15.316
DRR006521	Root Winter glycyrrhizin high producing strain	13.545
DRR006522	Root Winter glycyrrhizin high producing strain	13.686
DRR006523	Root Summer glycyrrhizin low producing strain	11.423
DRR006524	Root Summer glycyrrhizin low producing strain	10.836
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.086
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.204

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.731
SRR2868004	Drought Stress (root)	20.494
SRR2967015	Control (root)	16.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.873
SRR9715740	Leaf	20.919
SRR9715741	Leaf	15.236
SRR9715739	Root	3.749
SRR9715742	Root	9.378
SRR9715743	Root	5.761

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.732
SRR8749028	MeJA induced 9h	7.797
SRR8749029	MeJA induced 9h	5.370
SRR8749030	Uninduced	1.787
SRR8749031	Uninduced	0.430
SRR8749032	Uninduced	1.459

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.894
SRR8400027	Control - Root	17.983