Gene detail

Gene detail information of Glyur000092s00007503

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55660.1	6.00E-60	DEK domain-containing chromatin associated protein
NR	AET00770.2	0	DEK carboxy-terminal domain protein [Medicago truncatula]
trEMBL	tr\|G7K4Q4\|G7K4Q4_MEDTR	0	DEK carboxy-terminal domain protein {ECO:0000313\|EMBL:AET00770.2}

Sequence

Transcript Sequence

>Glyur000092s00007503.1
CTCACTGAGCGAGTGAGTGGGAGAGATCGAAGCCAAAGGCAAACTTTTTTCACTGAGAAATCCAAAGCTTTGTTCTGTTCTCTTTCAACTTCCGAATTTGCATAAGTTATCAAACTCAGCAAAGCCACCGGTGTAGTAGAAAGAGTGTGCATGAAGAAGTAATCTATTGATTTGGGGTAGATAAGATCGGTATGGGTGAAGAAGAATCAGTCAATACAGTTTCCAACACTGACTCAAAAGGCAATAGCATGCCAGAGAAAACTTTAGATGATGTGAGTGAAAAGAAGGACTTGGAAGCNAAGGGAGGGAAAATCTTGGAGGATAATGGAGTCAAAGACTTGAAGGAGGATGGTGTAAAAGAAATGGAAGTTGATAAGAAAGCTGATGGTGATGAAGGACTAGAAAAAGAAGAGGATAAGAAAGTTGATGGTGGTGAAGTAATAAAAGACAATGACAAAGTTGGTGCTGGGAAAGAAATAAAAGAAGAGGATGTTATAAAAGAAATGGAAGTTGATAAGAAAGCTGATGATGGTGAGGAAGGACTAGAAAAAGAAGAGGATNAGAAAGTTGATGATGGTGAAGTAATAAAAGACAATGACAAAGTTGATGATGTGGAAGTAATAAAAGACAATGACAAAGTTGATGGTGGTGAAGTAATAAAAGACAATGACAAAGTTGGTGATGGGGAGGAATTAAAAGAGGATAAGAAAATTGATGCTGGGGAAGAAATAAAAGAAGAGAATGATATAAAAGAAATGGAAGTTGATAAGAAAGCTGATGGTGAGGAAGGACTAGGAAAAGAAGAGGATAAGAAAGTTGATGATGATGAAGTAATAAAAGACAATGACAAAGCNGGTGATGGGGAAGAACTAAAAGAGGATACGAAAGTTGATGAAGGGGAAGAATTAAAAGAGGATAATAAAGTTGATGCTGGAAAAGAAATAAAAGAGGATAGGAAAAATGATGNCACAAATGAAATAGAAGAAGACAAGAAATATAATTCTGTGAATGAAACAGAAGAAAATAAGAAAGATGATAATGGGCTTGAGAACGACAAATTGGATGAAGAAACTGGGGTTAAGGAAACTGTGGCTGGTAATAAAGAAGAGAAGGAAAACGTAGAAGCTAAGAAACCAGAATTGGATGCGATGGAAGAAGAGGGTATCCCNGAAGACAAAGATGAGAGCAGTGAANAGGAGAAAAGTCAAGAAGAGGAGGAGGAAGGTCAGGATAAGATTGATGATAAGTCAAATGAAGGAGATGAGGAAGAAGATATTAAGGTTGAGAAAGGATTGAAAAAACGTGGGAAAGGAAAGATCAATGGGGNGAATGTGAAAAAGAAAAGAAAGGAACTGAAGGAGACAGAGCCAAGGACTCCTTCTATCAATCGTCCTGTACGTGAAAGGAAATCGGTTGAGAGGTTGGTAACATCAATGGAGAAAGATGCATCCAAAGAATTTCACGTTGAAAAGGGTCGTGGTACGCCTTTAAAAGATATACCCAATGTGGCATTTAAATTTTCTAGAAGGAAGGCCGATGATACTTTCAAATTGCTCCATACAATCCTCTTTGGTAGGAGAGGAAAGGCAGTTCAGATCAAGAGCAATATATTAAGGTTTTCTGGTTTTGTGTGGCATGAAAATGAGGAAAAGCAAATGATTAAAGTAAAAGAAAAACTTGACAAGTGTAATAAAGAGAAGTTACTGGAATTCTGCGATGTGCTTGACATACCAATTGCAAAGGCAACAACAAGGAAGGAAGATATTGTTGCGAAGTTAATAGAATTTTTGGTTGCCCCTCAAGTTACAACAACTGTGTTACTTGGAGAAAACAGAAAGCCAATTAAGGGGAAAAAGCGCAAGCGCATAGCAAAAAGAGTTTCATCAAGATCTGGAACAACAATGTCAAGACGTTCTGCTAAGAGTCGGAAGAAAAATGATTCAGTAGCAGAGGAGAGAAAGAGTGCAACTGATACAGAAAATGAGTCAGAGGAAGAAGAGAAAGATGAAGAAAATGAAGAGGAGAATGAAAATGGTGTTCCTGACAAATCTGAGGATGAAATGCCCGAGAAATCTGAAAGTGAGGATGAAAATGATTCTGATAATGAATCTGAAGATGTCAAGAAACCGAGAAAGAGGAGTAAAACAGCATCCTCAAAGAAAGAATCCGCTGGAGCAAGTAAAATAAAGAAAATTACATTTAAAACAAAATCTCGCTCGGCACCAAAGAGAACTTCTAAGAAATCATTCTCTACCCACTCAGAGCCTGATGATGATAGTGAGGGAAGTCCAAAGGTCTCTTCAAGGAAGAAGAAAAATGAAAAACAAGGAAAGCAGAAGACCTCAACTCTGACTAAGCCTTCCCCCAAGGAGAAAACACAAAAGGTTACTAGAGGAAAGGGCAAGAACAAAGAGAAGTTGAACCCCAGTGATGATCAGTTACGCAATGCAATATGTGACATTTTTAAAGAAGTCGACTTCAATACGGCTACATTTACTGACATTCTGAAGCTACTTGCTAAGAAATTCGACGCAGATCTTACCCCAAGAAAGGCATCTATAAAGACCATTATTCAGGAAGAGCTGACAAAACTAGCAGATGAAGAAGAAGAAGAAGAAGAAGAAGGGGATGCTGAGAATGATGAGAACCAATCCATTGGCCAAGATGTTGAAGCCTGACTGAAGATTAAATGTGACTTCTTGAAGATAGGCTTAGCGATGGATACTTTCTACCACAGTTATGCCTTGTATTNTATGTACACTTTGTAGAGCAAGAGTTGCTGTATCATATTATCATTCTGAGCATCTATCCAATCTCATCTATGAGATGACAAGAAGCCAGTATTTTCATAATTTAGTGGAGGGTCTGGAGGCTTTTGTTGTACTACACATGAACATAAATTTGTAGGGTTTTACTTCAATACTAGTTTCACATATCTGTCTAGTTTAGTAAATTTAATAAATATTAGACATTTGAAGTTGGCACCTTATTGCTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	118439	124951	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007503.1	PF08766.6	DEK_C	746	799	8.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	72.048
SRR1783600	control	72.055
SRR1783602	moderate drought stress	164.422
SRR1811619	moderate drought stress	162.074

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	129.824
DRR006520	Root Summer glycyrrhizin high producing strain	128.688
DRR006521	Root Winter glycyrrhizin high producing strain	62.497
DRR006522	Root Winter glycyrrhizin high producing strain	60.340
DRR006523	Root Summer glycyrrhizin low producing strain	207.850
DRR006524	Root Summer glycyrrhizin low producing strain	209.828
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.667
DRR006526	Leaf Summer glycyrrhizin high producing strain	59.440

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	140.044
SRR2868004	Drought Stress (root)	177.173
SRR2967015	Control (root)	176.410

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	55.600
SRR9715740	Leaf	69.294
SRR9715741	Leaf	66.854
SRR9715739	Root	3.564
SRR9715742	Root	18.467
SRR9715743	Root	16.580

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	164.053
SRR8749028	MeJA induced 9h	99.012
SRR8749029	MeJA induced 9h	137.481
SRR8749030	Uninduced	53.343
SRR8749031	Uninduced	19.604
SRR8749032	Uninduced	33.446

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	119.381
SRR8400027	Control - Root	115.705