Gene detail

Gene detail information of Glyur000092s00007502.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47640.1	2.00E-52	nuclear factor Y, subunit B2
NR	AFK41105.1	1.22E-98	unknown [Medicago truncatula]
Swissprot	tr\|O23310\|NFYB3_ARATH	3.00E-72	Nuclear transcription factor Y subunit B-3
trEMBL	tr\|G7K4Q5\|G7K4Q5_MEDTR	5.00E-99	Uncharacterized protein {ECO:0000313\|EMBL:AFK41105.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	114743	115348	-

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component

GO:0005622 intracellular

GO:0005634 nucleus

molecular_function

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007502.1	PF00808.18	CBFD_NFYB_HMF	27	91	6.00E-28

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	37.652
SRR1783600	control	44.259
SRR1783602	moderate drought stress	65.006
SRR1811619	moderate drought stress	70.901

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	73.003
DRR006520	Root Summer glycyrrhizin high producing strain	75.994
DRR006521	Root Winter glycyrrhizin high producing strain	19.334
DRR006522	Root Winter glycyrrhizin high producing strain	18.992
DRR006523	Root Summer glycyrrhizin low producing strain	67.931
DRR006524	Root Summer glycyrrhizin low producing strain	72.151
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.993
DRR006526	Leaf Summer glycyrrhizin high producing strain	66.996

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.251
SRR2868004	Drought Stress (root)	47.206
SRR2967015	Control (root)	57.644

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.718
SRR9715740	Leaf	54.527
SRR9715741	Leaf	41.577
SRR9715739	Root	106.229
SRR9715742	Root	41.087
SRR9715743	Root	52.828

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.033
SRR8749028	MeJA induced 9h	17.456
SRR8749029	MeJA induced 9h	30.374
SRR8749030	Uninduced	27.028
SRR8749031	Uninduced	10.378
SRR8749032	Uninduced	14.766

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.054
SRR8400027	Control - Root	47.953