Gene detail

Gene detail information of Glyur000092s00007492

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13180.1	0	NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein
NR	XP_004491518.1	0	PREDICTED: ribosomal RNA small subunit methyltransferase B-like [Cicer arietinum]
COG	YP_003570942.1	1.00E-110	ribosomal RNA small subunit methyltransferase B [Salinibacter ruber M8]
trEMBL	tr\|G7KEH7\|G7KEH7_MEDTR	0	Ribosomal RNA small subunit methyltransferase B {ECO:0000313\|EMBL:AET00798.2}

Sequence

Transcript Sequence

>Glyur000092s00007492.1
GGAAGTATCTCACAAACCAAAACAACGTTAGGAATCGAAAATAGGAAGAAAGTAGAGATATGGCGCAAGTGGTGTACCTGGGTTTGCCTTTCCCCGCACAACCCCACAAAATTGTAGCTTCTTCTTCACCATCTTCCAAACCATTGAAGCTTCCCCACAGAACCCGCAGCACCAAATTATCCATTCCCACCTCTACCAACGGTGCTGCCAACCATTCGCTTAAAACCCAGAAGCTGAATTCAGAGGTTTCTCCTCATAGAGCTGTGTCAGNGGTGAGATTGATGCGGATTGAGCATGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCGGGTGAAAACGAGATGGGTTATGTTCAAAGAACGCTTGGNTTTCGCACCCGGGAATTAAATCATCACGACCTTAGATTGGTTACAGACATTGTTGGGGGTACAATTCGTTGGAGAAGATATCTTGATCATCTGATCAGTTCATTATGTCATGATAAAGATATATCTAGCATCGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGATTGTCAAATTAGATATGCCGCCTTATGCTGTTGTAGATGAGAATGTGAGGCTTGCCAAAGCTGCTTTAAGGCCGGGTGCTGGCAACATGGTCAATGGAATCCTCAGAAAGCTNGTTGTGCTTAAGGAAAATGGCACTCTTCCTTTGCCCAAAGTGGAGGGCGATGATCGTACTCAAGCACGTGCTCTGGCAACTCTCTACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTTGGTCAGGAAGAAGCTATTAAATTGATGATATGGAACAACAGTGAACCCAGTTTTAGCTTAAGGCTACATGTGAACACAGACAGTGAAGAACTCAAGCTATATATTTGTGCTAATTTCAGAGCAAATCGGGCTAGAGGTTTTTCAAGAGATGACCTTGTGACACAGCTTAATGCACTGAAGGTTCCACACAAGCTTTCATTGCATTTGGATCACTTTGTTCGCATCAAAACTGGGTTGCAGATTGTCATTCATGCCGGCCTACTCAAAAAGGGTTTATGTTCAGTTCAGGATGAGAGTGCAGGTCTGATAGTTTCTACTGTGGATCCTCAACCTGGNGAAACCATCATTGATTGCTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAATGGTCAAGTTGATGTAAATCGTGGTAGGTTGAGAATTCTTAAAGAGGCAGCAAAGTCGCACCAAGTAGATGGTGTNATTACCACCATCCATGCGGATCTTCGTACATTAACTGACAGTGAACCACTTAAGAGTAACAAAGTTTTGTTGGATGCTCCATGCTCAGGACTTGGTGTTCTTTCGAAGAGAGCGGACTTGCGTTGGAATAGGAAGCTGGAGGATATGGAACAGTTGAAGAAATTACAAGATGAGCTCCTGGATGCAGCATCCANATTGGTAAAACCCGGGGGAGTATTAGTTTATAGTACATGCTCCATAGATCCTGAAGAGAATGATGAGAGGGTAGCTGCATTTCTTGTAAGACATCCGGATTTTCACATTGATCCCGTAGACAGATATGTTCCACCTGATTTTGTGACACAGAGTGGTTTCTATTTCTCCAACCCCGTAAAACATTCACTGGATGGCTCCTTCGCAGCGCGTTTGGTACGCGCTTTATAAAANGAAAATTTCAGGGAAATCCTTGGTCAGTCTATATCCTTAATTGGATGACATTCAATGAAAATCTAAGAGGCTGCTTACAAGTTACTTCTGTGATGGTCTATTCTCCAATTCTTCTTCATGCTTTGAAATCAAGCATTTACACCTTCAGTGGGATACTTCACTTCCATAACAGACACTCTGATTTCTCTCCCNAGAAGAGGTTTATATATGTGAGATTGCCAGCAAGTTCTCTTTCATCAGGCACTTCTGGANTATGACGAATTGATGATCCTTAAAACAAGTACATATGTCAGAGGATAAAAGTTTTGAATGGAATGTCCAAGATTCAAAAGTATTTTATTTTATCTCAATAGGAAAATTTTGTGGGAAAATTTAGTAGCTGTTAACAAGTTATTTTTGTTGTTATGCTGCTAATTACAGCACNTGAACGTTTATATTATTGGATGCCAATAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	73671	79518	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003723 RNA binding

GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007492.1	PF01029.13	NusB	98	204	3.50E-23
Glyur000092s00007492.1	PF01189.12	Nol1_Nop2_Fmu	334	539	1.50E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.808
SRR1783600	control	1.719
SRR1783602	moderate drought stress	1.342
SRR1811619	moderate drought stress	1.361

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.486
DRR006520	Root Summer glycyrrhizin high producing strain	5.409
DRR006521	Root Winter glycyrrhizin high producing strain	3.867
DRR006522	Root Winter glycyrrhizin high producing strain	3.724
DRR006523	Root Summer glycyrrhizin low producing strain	2.701
DRR006524	Root Summer glycyrrhizin low producing strain	2.606
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.505
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.032

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.210
SRR2868004	Drought Stress (root)	2.805
SRR2967015	Control (root)	3.361

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.314
SRR9715740	Leaf	17.757
SRR9715741	Leaf	4.822
SRR9715739	Root	0.590
SRR9715742	Root	1.588
SRR9715743	Root	1.422

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.007
SRR8749028	MeJA induced 9h	0.886
SRR8749029	MeJA induced 9h	0.807
SRR8749030	Uninduced	0.501
SRR8749031	Uninduced	0.053
SRR8749032	Uninduced	0.019

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.699
SRR8400027	Control - Root	4.241