Gene detail information of Glyur000092s00007491 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55850.1 | 2.00E-20 | RPM1-interacting protein 4 (RIN4) family protein |
| NR | XP_004491519.1 | 4.80E-34 | PREDICTED: RPM1-interacting protein 4-like [Cicer arietinum] |
| Swissprot | tr|Q8GYN5|RIN4_ARATH | 2.00E-09 | RPM1-interacting protein 4 |
| trEMBL | tr|G7KEH8|G7KEH8_MEDTR | 7.00E-33 | RPM1-interacting protein 4 (RIN4) family protein {ECO:0000313|EMBL:AET00799.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00092 | 70277 | 70971 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000092s00007491.1 | PF05627.6 | AvrRpt-cleavage | 24 | 61 | 1.90E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 457.970 |
| SRR1783600 | control | 462.772 |
| SRR1783602 | moderate drought stress | 429.359 |
| SRR1811619 | moderate drought stress | 432.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 488.758 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 505.371 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 310.521 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 304.157 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 398.103 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 389.101 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 79.979 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 79.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 76.715 |
| SRR2868004 | Drought Stress (root) | 71.979 |
| SRR2967015 | Control (root) | 77.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.776 |
| SRR9715740 | Leaf | 42.801 |
| SRR9715741 | Leaf | 51.287 |
| SRR9715739 | Root | 128.110 |
| SRR9715742 | Root | 104.786 |
| SRR9715743 | Root | 95.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 66.393 |
| SRR8749028 | MeJA induced 9h | 40.921 |
| SRR8749029 | MeJA induced 9h | 68.094 |
| SRR8749030 | Uninduced | 34.211 |
| SRR8749031 | Uninduced | 41.191 |
| SRR8749032 | Uninduced | 58.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 121.427 |
| SRR8400027 | Control - Root | 115.396 |