Gene detail

Gene detail information of Glyur000092s00007490.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55850.1	1.00E-165	cellulose synthase like E1
NR	XP_003545093.1	0	PREDICTED: cellulose synthase-like protein E6-like [Glycine max]
COG	YP_001865112.1	2.00E-21	cellulose synthase [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q651X6\|CSLE6_ORYSJ	0	Cellulose synthase-like protein E6
trEMBL	tr\|I1M6F4\|I1M6F4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G01660.1}

Sequence

Transcript Sequence

>Glyur000092s00007490.1
ATGGGAGAAGAGGAGAGGCATGGATTGTTCGAGACGAAAGAAGCNAGATTTGGAGGAGGGGTTTACAAGTTATTTGCGAGTACAATTTTTGCATGCATCGGCTTGATATGGGTGTACAGAGTAGTAAACATGCCAACATGGGGTGGATATGATGATGATGATGATGATGATGATGAACATGAAGGGATGATGATGATGAACATGATGAGGTGGTGGGCTTGGGCCACTGTTTTCGTGTGCGAGCTTGCTTTTGGATTCTACTGGATAATCACTCAGTCCGCTCGTTGGAGAGTTGAAGAGGAATTACCAGGAGTGGACATATTTGTGTGCACAGCAGACCCAAAGAGGGAGCCACCATGGATGGTGATTAACACCGTATTATCGGCCATGTCATACAATTATCCTTCNAATAAACTGAGTGTGTACCTTTCTGATGATGGAGGGTCAGAGCTAACATTCTATGCTCTGTTAAGGGCCTCTCTTTTCTCCAAACACTGGTTACCATTCTGTAGAAGATTCAAGGTTCAACCCACCTCACCCGAGGCATACTTTCATTCCCTATCCCNAACTTGTGGCAGCTCTGAGGATGANGCCACTGAGTATGGCCAAGCATGCTTATCTATCAAGAAATTATACGAAGACATGAAAAGTGAGATAGAATCAGTTGTAGCAAGGGGCAAAGTTCCAGAAAATGTAAAGGATCAGCATAGAGGATTCTTAGAATGGAATCCCCAAACTACAAAGCAGGACCACCAATCTATCGTGCAGATCATAATCGATGGGAGGGACANAAATGCTGTAGATGAATGCGGGTTTCGATTGCCAACGGTTGTATACATGGCACGCGAGAAACGACCCAACTACCCTCACCATTTCAAAGGGGGAGCCATTAATTCATTGATAAGAGTGTCGTCAGAGATAAGCAATGCCCCTTTCATCCTCAGCTTGGATTGTGATATGTACTCAAACAACGCAGATACGATTCGAGAAATACTATGTTTCTTCTTGGATGAGACAAAAGGCCACGAGATAGCTTATGTGCAATTCCCGCAGGGCTTTGATAATATCACCAAGAATGACCCTTATGCAAATAACTATCTTGTGACCCACGAGATTGANCTAGCTGGCATAAGTGGATATGGAGCAGCCTTGTATTGTGGAACTGGGTGTTTACATCGAAGAGAGAGTCTATCAGGAACTCACTTGAGAGATTACAAACCAAAACGGGACACCAAGNCTACTAAAAGAGAAGATCACAGAACAGTCCATGAATTGAATGAAGCATCCAAGGCTCTTGCAACTTGCACCTATGAGCAAGGCACTCAATGGGGGAAAGAGATGGGATTAGTATATGGTATTCCTGTGGAAGACATTGCTACTGGCCTTGTAATCTCATGCAGGGGTTGGAAATCGATTTATTACATACCCAATAGGAAAGCTTTCTTGGGTGTGGCTCCAACAACCTTAGATGTGGGTCTTGTTCAGCATCAGAGGTGGTCAGAGGGCATGTTCGAGGTTTTCATCTCCAAGTATTGCCCTTTCATTTATGGGCATGGGAAGATAAACTTGGGTATACAACTGGGGTATTGTAATTACCTCTTGTGGGCTCCAACCTTATATGAGTATTTGGAATGTGGGTCCACAATAAAGGGTTGGTGGAACTTGCAAAGAATGACGCTCATCAGAAGGACCACCGCTCATCTCTTTGGTTTCATTGACGCCATNACCTTGCAATTAGGACTATCACAGACAAACTTTGCCATCACAGATAAGGTGGTTACTGAGGATGGTCAAAAGAGATATGAGCAAGAGGTCATTGACTTTGGAGGCTCTTCAATCATGTTGACCATATTAGCAACAGTGGCATTGCTAAACCTTTTTGGTCTCTTTGGGGGAATTATGAGGATTCTGATCATGGATTTGGGATTTAACAGCTCAAGCCAATTGGTTGTGCAGATTGTGCTGAGTTCATTGACAGTGATGGTCAATTTACCAGTTTATGAGGCACTTTTCATCCGTAGTGATAAAGGATCCATATCATCCTCAGTCATGCTCAAATCTGTTGTCTTGGCCTCNTTGATCTGTTGCCTAGCACCTCTTATCGTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	63846	68712	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function
GO:0016760 cellulose synthase (UDP-forming) activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007490.1	PF03552.9	Cellulose_synt	105	404	4.40E-85
Glyur000092s00007490.1	PF03552.9	Cellulose_synt	421	535	1.30E-25
Glyur000092s00007490.1	PF03552.9	Cellulose_synt	544	696	5.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.064
SRR1783600	control	2.076
SRR1783602	moderate drought stress	4.540
SRR1811619	moderate drought stress	4.590

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.379
DRR006520	Root Summer glycyrrhizin high producing strain	14.181
DRR006521	Root Winter glycyrrhizin high producing strain	0.351
DRR006522	Root Winter glycyrrhizin high producing strain	0.403
DRR006523	Root Summer glycyrrhizin low producing strain	8.218
DRR006524	Root Summer glycyrrhizin low producing strain	7.835
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.199
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.754

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.184
SRR2868004	Drought Stress (root)	3.871
SRR2967015	Control (root)	4.437

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.903
SRR9715740	Leaf	22.177
SRR9715741	Leaf	25.280
SRR9715739	Root	1.759
SRR9715742	Root	7.130
SRR9715743	Root	6.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.365
SRR8749028	MeJA induced 9h	28.928
SRR8749029	MeJA induced 9h	13.981
SRR8749030	Uninduced	9.928
SRR8749031	Uninduced	7.358
SRR8749032	Uninduced	7.297

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.984
SRR8400027	Control - Root	5.279