Gene detail

Gene detail information of Glyur000092s00007481

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26590.1	0	oligopeptide transporter 5
NR	XP_004491523.1	0	PREDICTED: oligopeptide transporter 1-like [Cicer arietinum]
COG	YP_005371768.1	2.00E-06	OPT family oligopeptide transporter [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q9SUA4\|OPT5_ARATH	0	Oligopeptide transporter 5
trEMBL	tr\|K7KBN3\|K7KBN3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G47140.2}

Sequence

Transcript Sequence

>Glyur000092s00007481.1
ATGGCAGGGGTCGACGTTGAAACCACATTGCCTTCGCCTGTTAAGGAACACGACTCCAAAGTTGTCATTCAAGATGACATAGAGGTGGATGACTGTCCCATAGAGCAGGTGAGGCTTACGGTTCCGATAACCGACGACCCTACACAGCCAGCACTGACATTCCGGACATGGGTTCTTGGGTTGGCATCATGCATCATCCTTGCCTTTGTGAACTTGTTCTTCAGCTACAGAACCAACCCTTTGTCCATTTCCTCTGTCTCAGCACAGATTGTTACACTCCCACTTGGGAAGCTAATGGCAGCAACCCTCCCCACCACAAAGTTCAGAGTCCCTTTCACCAAATGGTATTTCTCCATGAACCCCGGCCCATTCAGCTTGAAAGAACATGCCCTCATCACCATCTTTGCCAGTGCTGGATCTAGTGGTGTCTATGCAATCAACATCATCACAATTGTCAAGGCTTTCTACCACAGGAGCATCCATCCACTGGCTGCTTTTTTGCTAGCACTCTCAACCCAGATGCTTGGTTATGGATGGGCTGGGATTTTCAGAAGATTCCTTGTGGACTCTCCCTACATGTGGTGGCCTGCTAACCTTGTCCAGGCAATATCAACAATCTCCTTTGTTTGCTTGATTTGGAAAAACTCCATCACTGCACAACAGATTGGTTCAGGCATGAAAGGCCTTGGCATTGGCTCATTTGGCCTCGATTGGAACACGGTCGCCGGCTTCTTAGGCAGTCCTTTGGCTGTGCCTGGCTTTGCCATCATCAATTATTTGGTTGGATTTGTGTTGTTTGTCTGGGTTCTGGTTCCCATCGCCTACTGGAACAACTTGTATGATGCCAAAAAGTTTCCCCTCATTAGCTCTCACACATTTGACTCCACTGGTGCAATATACAATGTTACTCGGCTCTATCTCAGTATCACATTTGCATTCGACTATGGGTTGAGCTTTGCAACTCTAACCGCCACTATTTCACATGTTGCACTCTTCCATGGAAAAATGATTCTTCAATTGTGGAGAAAGACAACAACTGCACTGAAAGGACAAGTTGGAGACGTGCACACAAGAATCATGAAGAGAAACTATGAACAAGTCCCTGAGTGGTGGTTTATCAGCATTTTGGTTGTCATGGTTATCATGGCCTTGGCGTGTTGTGAAGGCTTTGACAAGCAGCTCCAACTGCCATGGTGGGGAGTCTTATTTTCTCTAGTAATTGCATTGGTTTTCACTTTGCCAGTTGGGGTCATTCAAGCAACAACAAATATGCAAACTGGACTTAACGTGATTACAGAGTTGATAATTGGGTACCTTTACCCGGGAAAGCCCCTTGCTAATGTAGCCTTCAAGACTTATGGCTACATCAGCATGTCACAGGCACTTGCGTTTCTATCTGACTTCAAATTGGGCCACTACATGAAAATCCCTCCAAAATCTATGTTCATCGTACAGTTTATAGGAACTTTGGTTGCTTCAAGTGTCTCCTTTGGCACAGCATGGTGGCTTCTGGTAACTATTCCCAACATTTGTGATGAATCAAAATTGCCAGATGGAAGTCCATGGACTTGCCCCGGTGATGATGTGTTCTACAATGCTTCAATCATATGGGGAATAGTAGGGCCAAAGAGGATGTTCACCAAGGATGGAATCTACCCAGGGATGAACTGGTTTTTCCTCATTGGTCTACTTGCTCCTGTTCCAGTGTGGCTACTTGCTCGCAAGTTCCCAAACCACAAGTGGATTCAACTCATCAACATGCCCCTCATCATTGCAAGTTGCAGTGGCCTCCCACCAGCAAGAGCATTCAAGGCTTGGTGGGCTAGGCACACTTACATTCTCTCAGCTGCTTTGGATGCTGGGGTTGCTTTCATGGGTGTGATGCTCTACTTTGCACTACAAACTTATGGTACCTTTGGTCCAGCTTGGTGGGGTCTTGATGCTGATGATCATTGCCCCTTGGCTAAGTGCCCCACAGCTCCTGGTGTAATTGCCAAGGGATGTCCTGTTCTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00092	20920	25380	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000092s00007481.1	PF03169.10	OPT	52	202	2.50E-38
Glyur000092s00007481.1	PF03169.10	OPT	199	632	9.50E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.171
SRR1783600	control	0.186
SRR1783602	moderate drought stress	0.019
SRR1811619	moderate drought stress	0.024

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.107
DRR006520	Root Summer glycyrrhizin high producing strain	0.080
DRR006521	Root Winter glycyrrhizin high producing strain	0.046
DRR006522	Root Winter glycyrrhizin high producing strain	0.025
DRR006523	Root Summer glycyrrhizin low producing strain	0.134
DRR006524	Root Summer glycyrrhizin low producing strain	0.159
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.553
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.613

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.908
SRR2868004	Drought Stress (root)	0.861
SRR2967015	Control (root)	0.899

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	97.478
SRR9715740	Leaf	136.787
SRR9715741	Leaf	118.576
SRR9715739	Root	0.143
SRR9715742	Root	0.200
SRR9715743	Root	0.072

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.061
SRR8749028	MeJA induced 9h	0.003
SRR8749029	MeJA induced 9h	0.081
SRR8749030	Uninduced	0.056
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.331
SRR8400027	Control - Root	1.060