Gene detail information of Glyur000092s00007478 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55950.1 | 1.00E-123 | Nucleotide/sugar transporter family protein |
| NR | XP_007142440.1 | 0 | hypothetical protein PHAVU_008G280700g [Phaseolus vulgaris] |
| Swissprot | tr|Q8RXL8|Y1689_ARATH | 5.00E-36 | Uncharacterized membrane protein At1g06890 |
| trEMBL | tr|V7B9C6|V7B9C6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW14434.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00092 | 5948 | 8460 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000092s00007478.1 | PF08449.6 | UAA | 59 | 165 | 1.20E-06 |
| Glyur000092s00007478.1 | PF03151.11 | TPT | 185 | 310 | 1.40E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.060 |
| SRR1783600 | control | 3.237 |
| SRR1783602 | moderate drought stress | 5.442 |
| SRR1811619 | moderate drought stress | 5.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.983 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.366 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.772 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.963 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.345 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.600 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.173 |
| SRR2868004 | Drought Stress (root) | 7.163 |
| SRR2967015 | Control (root) | 8.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.137 |
| SRR9715740 | Leaf | 1.421 |
| SRR9715741 | Leaf | 1.714 |
| SRR9715739 | Root | 0.955 |
| SRR9715742 | Root | 1.857 |
| SRR9715743 | Root | 1.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.149 |
| SRR8749028 | MeJA induced 9h | 1.518 |
| SRR8749029 | MeJA induced 9h | 3.549 |
| SRR8749030 | Uninduced | 4.088 |
| SRR8749031 | Uninduced | 4.786 |
| SRR8749032 | Uninduced | 5.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.170 |
| SRR8400027 | Control - Root | 13.251 |