Gene detail information of Glyur000091s00010555 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01790.2 | 1.00E-52 | Ribosomal protein L13 family protein |
| NR | XP_003605252.1 | 4.56E-96 | 50S ribosomal protein L13 [Medicago truncatula] |
| COG | YP_004281952.1 | 1.00E-28 | 50S ribosomal protein L13 [Desulfurobacterium thermolithotrophum DSM 11699] |
| Swissprot | tr|P51292|RK13_PORPU | 4.00E-17 | 50S ribosomal protein L13, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01366} |
| trEMBL | tr|G7J8V5|G7J8V5_MEDTR | 2.00E-96 | 50S ribosomal protein L13 {ECO:0000313|EMBL:AES71786.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00091 | 313019 | 316608 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000091s00010555.1 | PF00572.13 | Ribosomal_L13 | 26 | 128 | 4.10E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.730 |
| SRR1783600 | control | 3.015 |
| SRR1783602 | moderate drought stress | 5.763 |
| SRR1811619 | moderate drought stress | 5.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.598 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.976 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.256 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.703 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.560 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.054 |
| SRR2868004 | Drought Stress (root) | 6.462 |
| SRR2967015 | Control (root) | 6.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.430 |
| SRR9715740 | Leaf | 4.506 |
| SRR9715741 | Leaf | 5.023 |
| SRR9715739 | Root | 1.332 |
| SRR9715742 | Root | 4.310 |
| SRR9715743 | Root | 4.704 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.778 |
| SRR8749028 | MeJA induced 9h | 0.448 |
| SRR8749029 | MeJA induced 9h | 0.470 |
| SRR8749030 | Uninduced | 0.629 |
| SRR8749031 | Uninduced | 0.321 |
| SRR8749032 | Uninduced | 0.372 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.865 |
| SRR8400027 | Control - Root | 8.602 |