Gene detail information of Glyur000091s00010552 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14250.1 | 7.00E-89 | Proteasome component (PCI) domain protein |
| NR | KHN45329.1 | 3.87E-178 | COP9 signalosome complex subunit 3 [Glycine soja] |
| Swissprot | tr|Q8W575|CSN3_ARATH | 3.00E-118 | COP9 signalosome complex subunit 3 |
| trEMBL | tr|I1K1Z8|I1K1Z8_SOYBN | 2.00E-178 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G15210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00091 | 295571 | 308977 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000091s00010552.1 | PF01399.22 | PCI | 304 | 391 | 2.90E-06 |
| Glyur000091s00010552.2 | PF01399.22 | PCI | 225 | 312 | 2.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.944 |
| SRR1783600 | control | 1.943 |
| SRR1783602 | moderate drought stress | 1.708 |
| SRR1811619 | moderate drought stress | 1.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.023 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.205 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.724 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.834 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.139 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.134 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.182 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.558 |
| SRR2868004 | Drought Stress (root) | 11.800 |
| SRR2967015 | Control (root) | 12.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.006 |
| SRR9715740 | Leaf | 0.003 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.171 |
| SRR8749028 | MeJA induced 9h | 2.932 |
| SRR8749029 | MeJA induced 9h | 1.951 |
| SRR8749030 | Uninduced | 2.456 |
| SRR8749031 | Uninduced | 0.497 |
| SRR8749032 | Uninduced | 1.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.077 |
| SRR8400027 | Control - Root | 0.038 |