Gene detail information of Glyur000091s00010551 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24090.1 | 2.00E-73 | chitinase A |
| NR | KHN09877.1 | 4.33E-152 | Basic endochitinase [Glycine soja] |
| Swissprot | tr|P29061|CHIB_TOBAC | 3.00E-117 | Basic endochitinase (Precursor) |
| trEMBL | tr|I1N7F0|I1N7F0_SOYBN | 2.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G22510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00091 | 294180 | 295082 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH18 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01183 | E3.2.1.14 | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000091s00010551.1 | PF00704.23 | Glyco_hydro_18 | 30 | 249 | 9.50E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.608 |
| SRR1783600 | control | 7.764 |
| SRR1783602 | moderate drought stress | 0.798 |
| SRR1811619 | moderate drought stress | 0.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.035 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.859 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.776 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.778 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 232.835 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 232.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.871 |
| SRR2868004 | Drought Stress (root) | 4.152 |
| SRR2967015 | Control (root) | 2.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 84.240 |
| SRR9715740 | Leaf | 38.664 |
| SRR9715741 | Leaf | 54.959 |
| SRR9715739 | Root | 28.886 |
| SRR9715742 | Root | 29.474 |
| SRR9715743 | Root | 27.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.067 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.035 |
| SRR8749031 | Uninduced | 0.042 |
| SRR8749032 | Uninduced | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.768 |
| SRR8400027 | Control - Root | 33.570 |