Gene detail information of Glyur000091s00010549 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14260.3 | 0 | Rubisco methyltransferase family protein |
| NR | XP_003618816.1 | 0 | SET domain protein [Medicago truncatula] |
| Swissprot | tr|P94026|RBCMT_TOBAC | 4.00E-15 | Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic (Precursor) |
| trEMBL | tr|G7KNL1|G7KNL1_MEDTR | 0 | Rubisco methyltransferase family protein {ECO:0000313|EMBL:AES75034.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00091 | 282036 | 286752 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000091s00010549.1 | PF09273.6 | Rubis-subs-bind | 359 | 483 | 3.70E-25 |
| Glyur000091s00010549.2 | PF09273.6 | Rubis-subs-bind | 359 | 483 | 3.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.183 |
| SRR1783600 | control | 9.050 |
| SRR1783602 | moderate drought stress | 11.292 |
| SRR1811619 | moderate drought stress | 11.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.603 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.510 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.920 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.520 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.873 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.538 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.406 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.767 |
| SRR2868004 | Drought Stress (root) | 16.894 |
| SRR2967015 | Control (root) | 19.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.366 |
| SRR9715740 | Leaf | 31.221 |
| SRR9715741 | Leaf | 27.975 |
| SRR9715739 | Root | 9.053 |
| SRR9715742 | Root | 11.746 |
| SRR9715743 | Root | 11.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.564 |
| SRR8749028 | MeJA induced 9h | 7.677 |
| SRR8749029 | MeJA induced 9h | 3.310 |
| SRR8749030 | Uninduced | 2.416 |
| SRR8749031 | Uninduced | 1.486 |
| SRR8749032 | Uninduced | 1.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.406 |
| SRR8400027 | Control - Root | 16.015 |