Gene detail information of Glyur000091s00010539 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40780.1 | 1.00E-170 | lysine histidine transporter 1 |
| NR | XP_004489581.1 | 0 | PREDICTED: uncharacterized protein LOC101496478 [Cicer arietinum] |
| Swissprot | tr|Q9FKS8|LHT1_ARATH | 0 | Lysine histidine transporter 1 |
| trEMBL | tr|K4BDI3|K4BDI3_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g093870.2.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00091 | 219774 | 232841 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000091s00010539.1 | PF01490.13 | Aa_trans | 46 | 305 | 9.10E-73 |
| Glyur000091s00010539.1 | PF01490.13 | Aa_trans | 416 | 713 | 7.40E-82 |
| Glyur000091s00010539.1 | PF01490.13 | Aa_trans | 714 | 783 | 3.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.942 |
| SRR1783600 | control | 5.787 |
| SRR1783602 | moderate drought stress | 3.414 |
| SRR1811619 | moderate drought stress | 3.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.350 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.262 |
| SRR2868004 | Drought Stress (root) | 11.973 |
| SRR2967015 | Control (root) | 10.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.673 |
| SRR9715740 | Leaf | 2.983 |
| SRR9715741 | Leaf | 2.464 |
| SRR9715739 | Root | 1.844 |
| SRR9715742 | Root | 1.963 |
| SRR9715743 | Root | 1.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.653 |
| SRR8749028 | MeJA induced 9h | 33.056 |
| SRR8749029 | MeJA induced 9h | 7.986 |
| SRR8749030 | Uninduced | 68.602 |
| SRR8749031 | Uninduced | 41.316 |
| SRR8749032 | Uninduced | 22.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.246 |
| SRR8400027 | Control - Root | 4.081 |