Gene detail

Gene detail information of Glyur000091s00010537

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01750.1	4.00E-173	Ankyrin repeat family protein
NR	XP_007151557.1	0	hypothetical protein PHAVU_004G056800g [Phaseolus vulgaris]
COG	YP_001957515.1	4.00E-13	hypothetical protein Aasi_0363 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q6AWW5\|Y5262_ARATH	4.00E-12	Ankyrin repeat-containing protein At5g02620
trEMBL	tr\|V7C3R8\|V7C3R8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW23551.1}

Sequence

Transcript Sequence

>Glyur000091s00010537.1
GGAGAGGTAGTTACTATACTCTTGTGACTTCTANCCTCAATTACTTTGTTTCCCTTTCATCTTTGCAAATTGCAATCATTAGTTTTTCAATCTGAGATTGAGTTGATTTGGTTTGGCTTGGTTCGGTTCGGTTTGGTTTGGCTCTTCTGAGTGTTGTTAAAGTTNTTGGTCTCTCAAAATCTCAACTAGTCTTTTTTAGTGTTGGAAACTCTTTGTTAATGCCTCCTACAAATTTTCCTCTTCGTTGGGAGAGTACTGGAGACCAATGGTGGTATGCTTCACCAATAGATTGGGCTGCTGCTAATGGCCACTATGACTTGGTTCGCGAGATGCTTAGAATCGACAGCAACCACCTCTTCAAGCTCACTTCGCTGCGCCGGATCCGGCGCCTTGAAGTGGTGTGGGACGATGAAGAACAGTTCAATGATGTTGCAAAGTCTCGGTCTCAGGTTGCACAGAAGCTTCTCTCAGAATGTGAATCCAAGAGAGGAGGGGGAAAAAACTCGCTCATCCGCACCGGTTACGGTGGATGGCTAATGTACACTGCTGCCTCGGCCGGTGACTTGTGTTTTGTTCAACTCCTTCTTGGGAGGAACCCTTTGTTGGTTTTTGGTGAAGGGGAGTATGGTGTTACTGATATACTGTATGCTGCTGCTAGGAGCAAGAACTGTGAGGTTTTCAGGTTGTTGTTTGATTTTGCAGTGTCACCAAGGTTCCTCAATGGAAGAGATGGGACTATGGAGGAGCATGTTGGGGATATTCCTTCTGTTTATAGGTGGGAGATGACCAATAGGGCTGTTCATGCTGCTGCTAGAGGAGGTAACCTGAAGGTTTTGGAGGAGCTTCTTGAAAATTGCTCTGATGTTTTGGCTTATAGAGATGCTGAGGGATCAACTGTTTTNCATGCAGCTGCAGGAAGAGGGCAGGTTGAGGTGGTTAAATATCTTGCATCATCCTTTGACATGATCAACTCCACAGACCACCAAGGAAACACTGCTTTGCATGTGGCTGCTTCAAGGGGCCAATTAGCTGCAGCTGAGGCTCTAGTCTCAGCATTTCCCACATTGATCTCTCTCACAAACAATGCCGGAGAGACTTTTCTCCACAAGGCTGTGTCCGGTTTCCGGACTCCTGCATTCCGAAGACTGGACCGGCAGGTCGAGCTTTTGAGGAAGTTACTAAGTAGGAACAACTTCCATGTAGTAGAGGATATCATCAATGTCAAGAANAATGATGGAAGAACTGCTCTTCACATGGCCATCATAGGAAATGTCCACACTGACCTTGTGCAACTATTGATGACTGCTCCATCAATAAATGTGAATATTTGTGATGTTGATGGAATGACTCCACTTGATTACCTTAGGCAGCNCCCGAATTCCGCGTCATCGGATATACTGATCAAGAAGTTGATCTCAGCTGGGGGAATGTTTGGTTGTGAAGGCTACAATTCAAGAAAAGCAATAGCTTCACACTTGAGAATGCAAAGCATTGGTAGTAGTCCTGGGACATCATTTAGAATCTCAGATAATGAGATATTTTTGTACACTGGAATTGAGAATGTGTTAGATGCTAGTGCTNCAATTGATCATGGAATTGCAGGAATAATGAGTTCATCTTCATCATCAGAACATATTCCATATGACTCAACCACTGAGATGAACCGTGTCTCGGCCGCTNCTAGCAAAAGGCCGAGTTCTGTGAACTATGCAGCGGCGAGGTTGAAAAGAGCNCTTCATTGGCCGCGGGTGAAGGACAAGAAAGTCGAAGGGTTCAAGAAATCTATGATGGATGAGGGTTCAGTGGACTCATCATGCAGGAAATGGAACAACAACAGTTGTGATGAAACTCACACCCCACTTAGACAAAGATTTTCTTCTAGGCCATCCTCACNTCCAAACAACAAAAGAACCCTCTCTGTAAGGAGTCACCAAGCAAGTCCAAATGCCAAGAAGAAGAGATTTGCTTCAGGACTAGTTCATGNTGTCATGCAATCCATGCCACAGGCAAAGGTTTCAGGCAGGTCCAGGTCTAGNTCCTTTTCGAAATCATCGATTTCTTCGTCTAGATCAATAGATAAGCAAAAGGGTATCTGCATTGACAACAATGACATTGCTGGGCCATCTTGTTCAAGAATTCAACTACCTGATGATGATGAATCACCAAAGTTTGTAAAGAGAAGTGTTAGTAAGAAGTTGAAGGCTCAATCTGGTGCCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00091	209453	212957	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000091s00010537.1	PF12796.2	Ank_2	142	246	1.30E-11
Glyur000091s00010537.1	PF13857.1	Ank_5	251	298	2.00E-06
Glyur000091s00010537.1	PF13857.1	Ank_5	334	381	1.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.866
SRR1783600	control	9.971
SRR1783602	moderate drought stress	11.436
SRR1811619	moderate drought stress	11.362

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.476
DRR006520	Root Summer glycyrrhizin high producing strain	42.793
DRR006521	Root Winter glycyrrhizin high producing strain	1.714
DRR006522	Root Winter glycyrrhizin high producing strain	1.605
DRR006523	Root Summer glycyrrhizin low producing strain	8.529
DRR006524	Root Summer glycyrrhizin low producing strain	9.234
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.288
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.346

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.625
SRR2868004	Drought Stress (root)	5.427
SRR2967015	Control (root)	9.649

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.052
SRR9715740	Leaf	1.122
SRR9715741	Leaf	0.814
SRR9715739	Root	3.511
SRR9715742	Root	6.641
SRR9715743	Root	6.263

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.136
SRR8749028	MeJA induced 9h	0.083
SRR8749029	MeJA induced 9h	0.226
SRR8749030	Uninduced	1.309
SRR8749031	Uninduced	1.216
SRR8749032	Uninduced	2.280

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.173
SRR8400027	Control - Root	12.011