Gene detail

Gene detail information of Glyur000091s00010527

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14605.1	2.00E-140	Mitochondrial transcription termination factor family protein
NR	XP_003524622.1	0	PREDICTED: uncharacterized protein LOC100781900 isoform 2 [Glycine max]
trEMBL	tr\|I1K1Z7\|I1K1Z7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G15170.1}

Sequence

Transcript Sequence

>Glyur000091s00010527.1
ATGTCTTGTACCTGTTCCTCGGGGCAGTGTTGTGTTGAGCTTCCCTCACTCTCAAAACCCACCTCAAAGATGAAAACTTTCTCCTCAATTCAACCACCCCATCATTTCCCTCGCTCCAGATTTTTCTCTTCCACTGCCACAAGGACTCAACTTCATTTTTCTGCAAAGGTCTACTNTTGCAGGGCAAAATCTGGCATAAATGGTTCATTTAACATAAGAGCGATGGCGATGGCTCCCACCCTCTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGTCCTTGTTTTTGAAGAAACAAGGTTTGAGCAATGCAATTGCAGCAAAAACCATCAACAAGTCAGGTCCCTTTATTGATCACCTTGTCTCAAAGCTTCACATTAAACACAAATCTCGGTACCTCGCAGGGAGAGAGCTTACAACTCTTGAGATCAGGGATGCTTTGATCTCTTATCTCGAATCCGTTTTCGAAGAGCATGGAGACATTNTTGTGGATGTAGTGGAAAACTATCCGAACGCACCGGTTAAGGATAAATCGGCCGTGCCGGTTCCTCCTCCTAGTCCTCCAGTGGTAGAATCTAAGAGGCCTAAAGCCGTGCCTCAAGTGAGTCAGATAGACCCTGCTGCTGGCAAGCTTCGCCCGCATATCGTTTATCTCATGGATCAACTTGGCATGGATATTGAGCAGATTAGGGGTATTACGCGCCGGTTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAGTTAAGCCAGTGGTCGAGTTTTTCCTTGAACTTGGAGTACCTAAAGAAAACATTCCCATCATCCTCACCAAAAGGCCTCAATTATGTGGAATCAGTCTATCTGAAAACCTTAAACCCACCATGAAGTTCTTAGAGTCTTTGGGTGTTGANGAGAAACAATGGCCGAAGGTGATCTACCGCTTCCCGGCCCTGCTGACTTATAGCAGGCAGAAGGTAAAGGAAAGTGTGGATTTTCTCCAGGAATTGGGACTCTCGGAAGAGAGCATAGGTAAGATCTTAACTCGCTGCCCGAATATCGTTAGTTACAGTGTAGAGGACAATCTACGACCCACGGCAAAGTACTTCCGTTCTTTGGGGGTTGATGTTGGCATTCTTCTATTCAGGTGCCCGCAAAATTTCGGTCTTAGCATCGAGGCCAACATAAAGCCNGTGACAGAGTTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATCGGGACTATGATTTCAAGATATGGACCCTTGTACACTTTCAGCTTGACTGAGAATTTGATGCCGAAATGGGATTTCTTTATGACCATGGACTACCCGAAATCTGAGCTGGTTAAATTCCCCCAATTTTTTGGATACAATTTAGAGAAAAGGATTAAACCAAGATATGCGCGTGTGAAAACATCAGGGGTGAGCTTATTGCTGAACCAGGTTCTTTCGCTGTCCAGCAGCAACTTTGAGATGACCTTGAAAAAGAAAATGAAGAAAATGCAAGCTGATTAGGATTCTATTCATATTAGCAGCATAGTTGTTCAATCAAATAATTAAAATTGTGACTTTCAGGCAATGTTTCAGGTTAGAAGATGGAAGGGGAATCTTGGCGCAACGGTTGGAGTTGTTGCCGTATGAATGAAAGTCAAAGGTTTGAGTTGTGAAATCAGCCTCTTGCAAATGCAACGTAACGCTGCCTAAAATAGATAAGTAATGGGTCCGACCGACTCTTCCCTTGATCTGCCTATGGTGGGAGCTCTATAGCAACAAGTTGCCCTTTTCCAGTTAGGCGTTTTTCGATCGATGACATTAGAAGTTACAACTTCCAATTAAGGGAAGTGAAAAGGTTGCAGTTATAGTGGAACATGGATCAATCTATAGGCTATAGCTTCAGGAAATACAGTTCATGATGCTGATGAACTTGAGCATTGAGCTGTAGTGCAGTGATTTTGGAGCATGTTGGTGCCTGAAACCAACATTTTTTACAGGGTTCTTGATATGAATGAGTCAATGACCCTGGTCAGCTCTACTTACAAGTTGCTGCTGTATATGTGATTGTGTTTATCTCCATATATATTAATTGGAGTTTTTCTTGTGTAACTTCTTGGTAAAAATAGGTGATTTGGAGATGCATTTGGTAAACATGAAGCCAAATTTTGCTACTACTGTATTGAAATGAGGCCATTCCGATCCGGGAAATTTACCTGTGTTTCTTAGGCTAAGGCATGTGTCACTTTCTAGATTGAGATACGTGTTATTTTGGATTTTTTACTATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00091	133192	136424	-

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005739 mitochondrion

molecular_function
GO:0003690 double-stranded DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000091s00010527.1	PF02536.9	mTERF	217	392	1.70E-28
Glyur000091s00010527.1	PF02536.9	mTERF	386	485	4.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.093
SRR1783600	control	1.102
SRR1783602	moderate drought stress	1.924
SRR1811619	moderate drought stress	1.887

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.534
DRR006520	Root Summer glycyrrhizin high producing strain	2.437
DRR006521	Root Winter glycyrrhizin high producing strain	0.877
DRR006522	Root Winter glycyrrhizin high producing strain	0.865
DRR006523	Root Summer glycyrrhizin low producing strain	1.553
DRR006524	Root Summer glycyrrhizin low producing strain	1.546
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.315
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.129

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.658
SRR2868004	Drought Stress (root)	4.060
SRR2967015	Control (root)	4.599

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.478
SRR9715740	Leaf	13.043
SRR9715741	Leaf	6.926
SRR9715739	Root	0.391
SRR9715742	Root	0.689
SRR9715743	Root	0.539

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.791
SRR8749028	MeJA induced 9h	2.440
SRR8749029	MeJA induced 9h	0.451
SRR8749030	Uninduced	1.280
SRR8749031	Uninduced	0.676
SRR8749032	Uninduced	0.434

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.267
SRR8400027	Control - Root	2.513