Gene detail information of Glyur000091s00010523 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11690.1 | 6.00E-157 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | KEH25393.1 | 0 | PPR containing plant-like protein [Medicago truncatula] |
| Swissprot | tr|Q9T0D6|PP306_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g11690 |
| trEMBL | tr|A0A072U8H3|A0A072U8H3_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH25393.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00091 | 114564 | 116249 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000091s00010523.1 | PF13041.1 | PPR_2 | 113 | 162 | 1.20E-11 |
| Glyur000091s00010523.1 | PF01535.15 | PPR | 209 | 238 | 0.00044 |
| Glyur000091s00010523.1 | PF13041.1 | PPR_2 | 240 | 289 | 1.30E-16 |
| Glyur000091s00010523.1 | PF13041.1 | PPR_2 | 310 | 359 | 4.50E-20 |
| Glyur000091s00010523.1 | PF12854.2 | PPR_1 | 412 | 441 | 4.10E-10 |
| Glyur000091s00010523.1 | PF13041.1 | PPR_2 | 450 | 499 | 1.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.292 |
| SRR1783600 | control | 1.229 |
| SRR1783602 | moderate drought stress | 2.049 |
| SRR1811619 | moderate drought stress | 2.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.376 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.286 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.564 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.497 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.875 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.802 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.581 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.251 |
| SRR2868004 | Drought Stress (root) | 2.374 |
| SRR2967015 | Control (root) | 2.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.805 |
| SRR9715740 | Leaf | 2.408 |
| SRR9715741 | Leaf | 1.238 |
| SRR9715739 | Root | 0.293 |
| SRR9715742 | Root | 0.651 |
| SRR9715743 | Root | 1.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.321 |
| SRR8749028 | MeJA induced 9h | 0.206 |
| SRR8749029 | MeJA induced 9h | 0.252 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.020 |
| SRR8749032 | Uninduced | 0.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.967 |
| SRR8400027 | Control - Root | 2.160 |