Gene detail

Gene detail information of Glyur000091s00010514

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14360.1	7.00E-42	Ubiquitin-like superfamily protein
NR	NP_001239668.1	5.35E-89	uncharacterized protein LOC100815369 [Glycine max]
Swissprot	tr\|Q0WPX7\|BAG2_ARATH	5.00E-24	BAG family molecular chaperone regulator 2
trEMBL	tr\|C6TN95\|C6TN95_SOYBN	2.00E-89	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G07600.1}

Sequence

Transcript Sequence

>Glyur000091s00010514.1
GCACCTACTCCCCCCCATGTGCCTCGTTGCCTTCCCAAGATCAACAAAAAAGACAAATGCCCATATTGTCTTCCATGTGTTCCTAACCTTATTGTCATTCCTGTTCCCTCTAAGTCTTCCTTTTTTGCTACACAAGGGGCTCCTTGTATTTTATTCATCCCTTCTTTCTTTTTTGTCACTTTTCACTCTTTCTAGCATTATATAAAGGACCTAACCACATCAAACTTCTCTTAACTCTTTAGCTCTAATTCTTCCACTTTCAATTCTTCCAAGAGAGACAAATTAAAAGAGCTTATTGAGAAAAGTTAAAAAAAGAAAAGAAAGGAATTAAGATGATTAAGTTGAGGTCAAAGAGGTTTNGCAGAAGCAGCTCCAAGAATGGCAATAATAATGGGAACAAGGCAGCATCATCATCCCCAGCAGAAAAGGATTGTAGAAGTGTGAGTGAGATCAAATGGGAACTCAGGCCTGGTGGCATGCTTGTCCAGAAAAGAGAGAGCAACCAAAGCTCTGGGGAGGGGATGATCACAATTAGAGTCTCAACTGTGTCAAAGTGGCATGACATCTCTATTGAAGCCACTTCAACTTTTGGGGAATTGAAAATGATTTTGTCACTGGTGACAAGTTTGGAGCCCAGAGAGCAGAGGCTTCTGTTCAGAGGTAAAGAGAGGGATGACAATGAGTTCCTACACATGATTGGGGTTAGAGACAAGGACAAGGTTCTGTTGCTAGAGGATCCAGCTATCAAGGAGATGAAGCTTCTTGGTTTGGCAAGAGGCCAACCCATTAACAATCCTTGTTGTACCATCAGTGTATGAGTCATACACTCTAANTGATCAAAACTCATAATTATTAATTAGTACTAACAAGAAAAGATTAAAAAAAATGTGAAGTTAAGTTTACTGTNATGATGGGGTCTTTCTTCACTTTTGTTTCTCTTAGAATAGGGAACTTTAATTATATGTACTTATCTTATGGTTGGACCCCTTTGGTTGATTTAAAAAATGTGTAAGCTGATGCAATGCCATGTCATGTGACAGAGTTTGCTATATTAATATAGAAGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00091	46605	48120	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000091s00010514.1	PF00240.18	ubiquitin	76	132	1.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.403
SRR1783600	control	9.560
SRR1783602	moderate drought stress	8.910
SRR1811619	moderate drought stress	9.102

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.658
DRR006520	Root Summer glycyrrhizin high producing strain	3.829
DRR006521	Root Winter glycyrrhizin high producing strain	2.088
DRR006522	Root Winter glycyrrhizin high producing strain	2.039
DRR006523	Root Summer glycyrrhizin low producing strain	5.051
DRR006524	Root Summer glycyrrhizin low producing strain	5.035
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.172
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.171

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.800
SRR2868004	Drought Stress (root)	26.472
SRR2967015	Control (root)	26.646

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.493
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	2.786
SRR9715742	Root	3.018
SRR9715743	Root	3.487

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	205.241
SRR8749028	MeJA induced 9h	97.179
SRR8749029	MeJA induced 9h	50.038
SRR8749030	Uninduced	3.173
SRR8749031	Uninduced	0.431
SRR8749032	Uninduced	0.719

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.079
SRR8400027	Control - Root	22.444