Gene detail

Gene detail information of Glyur000090s00011431.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17230.1	0	Leucine-rich receptor-like protein kinase family protein
NR	KHN26789.1	0	Leucine-rich repeat receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_004775215.1	5.00E-61	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9SHI2\|Y1723_ARATH	0	Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 (Precursor)
trEMBL	tr\|I1KU79\|I1KU79_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G18610.1}

Sequence

Transcript Sequence

>Glyur000090s00011431.1
ATGGCATTGGAGTTTAGTTTCCACTCCACAAAAAATGGGTTTTTGTACATGATGCTATTGTTGTTTTGCCTTGGCATCATCCTTGTAAGTTCCATTAGTGAAGAGGGTTCAAGCCTTTTGAAGTTCAGAAGTTCCCTTTTAGACCCAAATAACAATCTTCTTAACTGGAATGCTTCTGATTTGACTCCTTGCAATTGGACTGGTGTGTATTGCAAGGGTTCAGTGGTAACTTCTGTGAAACTCTACCACCTTAATCTCTCTGGTACTTTGTCCCCTAGCATCTGTGATCTCCCATGGTTACTTGAGTTGAACCTGTCAAAAAACTTCATCTCTGGCCCCATTCCTCAGGGCTTTGTTGACTGTGGTAAATTGGAGATTTTAGACCTTTGNACAAATAGGCTTCATGGACCACTTCTTCTGACCCCTATTTGGAAAATCACAACACTTAGAAGGCTTTACCTGTGTGAAAACTATATGTATGGTGAAGTGCCAAAAGAGATTGGGAATTTACTCTCACTTGAAGAGCTAGTCATTTATAGCAACAATTTAACTGGAAGCATTCCCACAACACTCAGTAAGTTGAAGCAGCTTAGAGTTATAAGGGCAGGTCTGAATGGCCTCTCAGGGCCAATACCTGCAGAAATTAGTGAGTGTGAGAGCTTGGAGACATTGGGTTTGGCACAGAATCAGCTAGTAGGTTCCATCCCAAGGGAGCTTCAAAAGCTTCAGAACCTTACCAATTTGATTCTATGGCAAAACTCTTTCTCTGGGGAGATTCCCCCTGAGATTGGAAATATTAGTAGCCTTGAATTGCTTGCTTTGCATCAAAATTCATTCATTGGTGCTATCCCCAAGGATCTCGGAAGGCTATCGCNGTTGAAGAGGCTTTACATGTACACCAACCAGTTGAATGGCACAATTCCACCAGAGCTAGGGAACTGCACAAATGCTATTGAGATAGATCTATCCGAAAACCGTTTGATCGGGATCATTCCCAAAGAGTTCGGTCAGGTCTCTAACCTTAGCTTGCTCCATCTATTTGAGAACAATCTGCAGGGTCATATTCCAAGGGAGCTTGGACAGTTGAGGCTGCTAAAAAATTTAGACCTGTCATTGAATAACTTAACAGGTACAATTCCACTGGAGTTTCAAAATCTCACATACATGGAGGATTTGCAGCTATTTGACAATCAACTTGAGGGTGTGATTCCTCCTCATCTTGGAGCTGTTAGAAACCTTACCATTCTCGATATATCTGCGAATAATCTCGTCGGTATGATACCTGTNCATCTTTGTGAATTTCAGAAGCTGCAATTCCTGAGCCTCGGATCGAATAGGCTGTTTGGAAACATTCCTTATAGCCTGAAAACATGCAAGTCTCTTGTGCAGCTAATGCTAGGGGACAACCAGTTGACAGGAAGCCTACNTGTTGAATTTTATGAACTTCACAATCTTACTGCACTCGAACTTTATCAGAACCGGTTCTCTGGGCTAATTAACCCTGGGATAGGTCAACTTAGGAATTTAGAGAGGCTTCTCTTGTCAGATAACTATTTTGCCGGGTATCTCCCTTCTGAGATTGGAAATCTGGCACAGCTTGTCACATTCAATGTTTCCTCTAATCGTTTCAGCGGAAGCATTCCTCATGAGTTGGGAAACTGTGTAAAACTGCAGAGGCTTGACCTCAGCAGGAACCAGTTTACTGGTATGCTTCCAAATGAAATTGGCAATCTGGTGAACTTGGAGCTACTGANAATTTCTGATAATATGCTCTCTGGAGAAATACCAGGCACTTTGGGGGACCTTATTCGTCTCACGGACCTCGAGCTTGGTGGCAACCGATTTTCAGGAAGCATCTCCTTTCACTTTGGAAGACTTGCTGCTCTTCAGATTGCCCTTAACCTGAGCCACAACAAACTTTCTGGCACAATTCCTGACAGCTTGGGGAGCCTGCAAATGCTAGAATCCCTTTACTTGAATGACAATCAACTTGTTGGTGAAATTCCTGCATTAATTGGTGACTTGCCTAGTCTTTTAGTATGCAATGTATCTAACAATAAGCTGGTAGGAATTGTTCCAGACACCACCACATTTAGAAAGATGGATCTCACAAATTTTGCTGGCAACAACGGGTTGTGCCGCGTAGGTGCCTATCACTGTCATCCATCCTTAGCTCCATCTCATCATGCAAAGCCAAGCTGGATCAGAGATGATTCATCAAGGGAAAAGCTAGTGNGCATTGTCTCTGGGGTGGTTGGATTGGTTTCTCTTATTTTCATAGTCTGCATTTGTTGGACCATGAGGCGCCGCCGCAGCCCTTCTTTTGTTTCACATGATGAAGGACAAACAAAGCCTCATGTCCTATATAGTAACTATTACTTCCCTAAAGAAGGCTTCACATACCAGGATCTCTTGGAAGCCACTGGCAATTTTTCAGAAGATGCAGTTCTAGGNAGAGGAGCTTGCGGCACTGTCTACAAGGCCGTTATGAATGACGGTGAAGTGATTGCTGTCAAGAAGCTGAATTCACACGGAGAAGGAGCAAATGTTGACCNAAGCTTCCTCGCGGAGATTTCAACCCTCGGAAAGATCAGGCACAGGAATATTGTGAAGCTGCATGGATTTTGTTATCATGAGGATTCTAATCTCCTCTTATATGAATACATGGAAAANGGAAGCCTCGGGGAACAACTTCATTCAAAATATGCTTACACCATGAAGGTGACTGAGAAATGTGACATCTATAGTTTTGGGGTAGTTTTGCTGGAACTAGTTACCGGGAGGTCACCGGTTCAACCGTTGGAACAGGGTGGTGATTTAGTGAATTGGGTTAGAAGAGCAATTCAAGCATCCGTACCTACATCTGAATTATTTGACAAGAGATTGGACCTTAGTGAACAAAGAACGGCTGAAGAAATGTCTCTTGTCCTCAAAATTGCACTGTTCTGTACAAGTGCATCTCCACTTAATAGGCCTACAATGAGAGAGGTCATTGCAATGTTGATTGATGCTAGGGAATATGTCAGCCACTCACCAACCTCTCCTACTTCAGAATCTCCACTTGATGAAGATGGAGGTTCTTCTTCCAAAGATGGTGGTCTTGAGTTGTAAATTACAAGCTTCACTATGTCCTCCAAGGAGGGTGATTTTGGTATTCCATCATTTTCTACATGTTTGAATNTTGGCCAATCATGTCAACCATGGCTCAATTGAATAAATAGCTTTAGCTAAAAAGAGTGTCACAAATCAGTTTCAGGGAGCAAATGCAATTAATNCTTTAACTCAATCAGGTGTCCTTCACGTGCAAGCTCCTCTATCTGAAAAGTGCTTTTTATCCAAACGGGTAACAAGCAAGTCCAAATGTCTAATATAGTATTTGTGATGATTTTTATTACATTGCAAAACTCAATCTTCTCCATCTAGGCATCTAGCGAGTTGAGCATACANAGATCGTCCTAACTCTTAGGTTCATTCTACTTTGAACCTTAATGATGATTGATGACTATCTTTGTTT

Protein Sequence

>Glyur000090s00011431.1
MALEFSFHSTKNGFLYMMLLLFCLGIILVSSISEEGSSLLKFRSSLLDPNNNLLNWNASDLTPCNWTGVYCKGSVVTSVKLYHLNLSGTLSPSICDLPWLLELNLSKNFISGPIPQGFVDCGKLEILDLXTNRLHGPLLLTPIWKITTLRRLYLCENYMYGEVPKEIGNLLSLEELVIYSNNLTGSIPTTLSKLKQLRVIRAGLNGLSGPIPAEISECESLETLGLAQNQLVGSIPRELQKLQNLTNLILWQNSFSGEIPPEIGNISSLELLALHQNSFIGAIPKDLGRLSXLKRLYMYTNQLNGTIPPELGNCTNAIEIDLSENRLIGIIPKEFGQVSNLSLLHLFENNLQGHIPRELGQLRLLKNLDLSLNNLTGTIPLEFQNLTYMEDLQLFDNQLEGVIPPHLGAVRNLTILDISANNLVGMIPVHLCEFQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNQLTGSLXVEFYELHNLTALELYQNRFSGLINPGIGQLRNLERLLLSDNYFAGYLPSEIGNLAQLVTFNVSSNRFSGSIPHELGNCVKLQRLDLSRNQFTGMLPNEIGNLVNLELLXISDNMLSGEIPGTLGDLIRLTDLELGGNRFSGSISFHFGRLAALQIALNLSHNKLSGTIPDSLGSLQMLESLYLNDNQLVGEIPALIGDLPSLLVCNVSNNKLVGIVPDTTTFRKMDLTNFAGNNGLCRVGAYHCHPSLAPSHHAKPSWIRDDSSREKLVXIVSGVVGLVSLIFIVCICWTMRRRRSPSFVSHDEGQTKPHVLYSNYYFPKEGFTYQDLLEATGNFSEDAVLGRGACGTVYKAVMNDGEVIAVKKLNSHGEGANVDXSFLAEISTLGKIRHRNIVKLHGFCYHEDSNLLLYEYMEXGSLGEQLHSKYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVNWVRRAIQASVPTSELFDKRLDLSEQRTAEEMSLVLKIALFCTSASPLNRPTMREVIAMLIDAREYVSHSPTSPTSESPLDEDGGSSSKDGGLEL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00090	338027	342452	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000090s00011431.1	PF08263.7	LRRNT_2	34	71	2.20E-11
Glyur000090s00011431.1	PF00560.28	LRR_1	365	386	0.52
Glyur000090s00011431.1	PF00560.28	LRR_1	556	578	0.022
Glyur000090s00011431.1	PF00560.28	LRR_1	633	651	0.39
Glyur000090s00011431.1	PF07714.12	Pkinase_Tyr	815	901	7.80E-15
Glyur000090s00011431.1	PF07714.12	Pkinase_Tyr	906	1000	0.00014

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.156
SRR1783600	control	1.179
SRR1783602	moderate drought stress	2.151
SRR1811619	moderate drought stress	2.236

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.715
DRR006520	Root Summer glycyrrhizin high producing strain	2.725
DRR006521	Root Winter glycyrrhizin high producing strain	5.932
DRR006522	Root Winter glycyrrhizin high producing strain	5.947
DRR006523	Root Summer glycyrrhizin low producing strain	3.008
DRR006524	Root Summer glycyrrhizin low producing strain	3.093
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.317
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.307

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.995
SRR2868004	Drought Stress (root)	3.767
SRR2967015	Control (root)	2.639

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.177
SRR9715740	Leaf	0.930
SRR9715741	Leaf	1.345
SRR9715739	Root	1.182
SRR9715742	Root	7.125
SRR9715743	Root	6.425

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.437
SRR8749028	MeJA induced 9h	13.907
SRR8749029	MeJA induced 9h	3.726
SRR8749030	Uninduced	3.284
SRR8749031	Uninduced	0.897
SRR8749032	Uninduced	1.656

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.019
SRR8400027	Control - Root	6.284