Gene detail

Gene detail information of Glyur000090s00011424

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G17220.1	Translation initiation factor 2, small GTP-binding protein
NR	AES66251.2	translation initiation factor IF-2 [Medicago truncatula]
COG	YP_003890534.1	translation initiation factor IF-2 [Cyanothece sp. PCC 7822]
Swissprot	tr\|P57997\|IF2C_PHAVU	Translation initiation factor IF-2, chloroplastic (Precursor)
trEMBL	tr\|G7IJ63\|G7IJ63_MEDTR	Translation initiation factor IF-2 {ECO:0000256\|RuleBase:RU000644}

Sequence

Transcript Sequence

>Glyur000090s00011424.1
ATGCTTATATTAGTGGGAAACGTGCAAGGAACAATGAGTTCTCTTGCTTCCCCGGTGAGTTTGGGGAGCCTCATGGGTGTGAGTTCCTCTGGAAGGTCCCATTCTGGTTTGAGGAGAGTCTCTCTTTCTAGAGGGAACTACTGTAATAAGGGGAGAAAGAGATGGCATTGNGTCTCCTTGTCTGTCTGTAGATATTCGGTGACCACAACTGATTTTATTGCTGACCAAGGCAATTCAGTGTCCCTTGATTCTAACAATGATAGTAGTAAAGGTGAAGATAGTACTAGTGCTGGTTCTTTTATCCTTAAGCCTCCTCCTAAGCCTGTGTTGAAGTCCTCGGATGATAAGGGTAACCCCGTTTTAGGCTCGAGCTTGAGTTCGGGTTTGGGTTCATCAAGGAATGCTGAGGACTCTGATGATGTGGAAGAGAGGAATAAAGTGATTGAATCACTTGGAGAGGTGTTGGAGAAGGCTGAAAAACTAGAGAATTCTAAGTTGGATGGTGAAAGAAATAANGGGTCGGTAAATAGACCAGCCAGATCTGATACGGACGTTAATCCGAAGGCTGATAATAAATCGATAGATTCGATGAAAAAGCAGAAGTCTAAAACCTTGAAGAGTGTGTGGCTTGATCCTCTAATTGCTCAAGCAGTTCTAGCCCCTCCAAAACCAGGGAAGGCCCCTCCCCCAGGAAGGTTTAAAGATGATTACCGGAGGAGAGGTGCCCCGGCTGGGGGAGGACTGAGAAGACGAATGATAAAGGAAGATGCAATTCAGGATGAGGACACTTCGGAACTCAATGTCTCTATTCCTGGTGCCGCAAGAAAAGGAAGGAAATGGAGTAAAGCAAGTCGAAAGGCAGCAAGGCTTCAGGCTGCCAAGGATGCAGCTCCTGTCAAAGTAGAAATTCTGGAGGTCAGTGACAAAGGTATGCTGGTGGAGGAGTTAGCCTACAGTTTGGCGATCAGTGAAGGTGAAATCCTGGGTTCTCTATACTCCAGGGGGATTAAACCAGATGGTGTGCAAACTCTAGACAAAGATATGGTGAAGATGGTTTGTAAAGAGTATGATGTGGAAGTCATAGATGCTGATCCTTTCAAAGTTGAAGGATTAGTGAAGAGAAGGGAAATTCTTGATGAAAATGACCTTGACAAACTCAAAGATAGGCCTCCTGTCATTACTATTATGGGCCATGTAGATCACGGCAAGACAACTCTTTTGGATTATATACGGAAGAGCAAGGTAGCTGCTTCCGAAGCTGGTGGGATCACACAGGGAATTGGGGCTTATAAAGTGCAAGTACCCGTTGACGGCAAACTGTTGCCTTGTGTTTTCCTTGACACTCCTGGGCACGAGGCATTTGGGGCAATGAGAGCCCGTGGAGCAAGCGTAACAGACATTGCTATTATTGTTGTGGCTGCTGATGATGGTATTCGTCCTCAAACAAATGAAGCTATAGCTCATGCCAAAGCAGCAGGCATAGATAAAGATGGAGCAAATCCAGAACGAGTCATGCAAGAGCTTTCTTCAATTGGTTTGATGCCAGAAGACTGGGGTGGTGACGTCCCGATGGTTCAGATAAGTGCTCTTCAAGGGAAGAATGTAGATGATCTTTTGGAAACTGTTATGCTTGTTGCCGAGTTGCAAGAACTGAAAGCTAATCCTGATAGAAGTGCGATGGGCACAGTCATTGAGGCAGGCATGGATAAATCAAAAGGACCATTTGCTACATTTATTGTGCAGAATGGCACCCTTAGAAGGGGAGATATAGTAGTTTGTGGGGAAGCTTTCGGAAAGGTGCGGGCTTTATTNGATGATGGTGGGAAGCGTGTTGATGTAGCTACACCTTCTATACCTGTACAGGTTATTGGATTGAATAATGTTCCAATTGCTGGTGATGCATTTGAGGTTGTTGAATCCCTTGATACTGCACGTGAAAGGGCAGAGTCCCGCGCTGAGTCATTGCGAAATGAGCGTATTTCAGCAAAGGCAGGGGATGGCAAGATCACCCTTTCTTCCTTAGCTTCTGCAGTTTCATCAGGAAAGCTTTCTGGACTAGACTTGCACCAACTAAATATTATTTTGAAGGTTGATCTTCAGGGATCCATTGAAGCTGTCAAACAAGCCCTGCAGGTGCTACCACAAGATAATGTCACATTGAAGTTTTTGTTGGAAGCAACAGGTGATGTAAGCACAAGTGATGTCGACCTTGCGGTTGCAAGCAAAGCTATTATTTTTGGATTCAATGTCAAAGCACCTGGCTCTGTGAAAAGCTACGCAGACAATAAAGCTGTTGAGATAAGAATATATAGAGTTATTTATGAATTAATTGATGATGTACGAAATGCAATGGAAGGGCTCCTGGAGCCTGTCGAGGAACAAGTAACAATTGGCTCAGCAGAAGTACGGGCCACGTTTAGCAGTGGTAGTGGTCGTGTTGCTGGATGTATGGTAACAGAAGGAAAGATAGTAAGTGGCTGCGGTATTCGAGTCATTCGGAAGGGAAAAGTAATTCATGTTGGTATTCTTGATTCTTTGAGACGGGTGAAGGAGATTGTCAAAGAGGTAAATGCTGGTCTTGAGTGTGGACTTGGGTTAGAAGACTATGATGATTGGGAAGAGGGTGATATTGTTGAGGCCTTCAACACAGTTCAGAAGAGGAGGACCCTTGAAGAGGCCTCAGCATCAATGGCAGCTGCTGTGGAAGGAGTAGGAGTTTGAACTATAAAATGAAGAAAGAAAAGAATGAAGAATGATGTGCCACTATGAGAGAGTAGTTCCTATGATCCTTTTTCTGAGTTTGACAGAGTTCAAATGGAAATTGTATTTCTCTCCAATTGATGTTATGAGATTGGGGAAGAGGTAACAATTCCCACATCATCATAGTATTTANATTGAGGGTGGGGCTGCTGAAGATCTGAGTTCAAAAGTGATTTATTCCATTGTTTTGCTGTAGAATTGTATATAACAAACGTAAATTAGTTTCAGCTCCTTGTTGTAAAGAAGGGAGGAAAAAAAAAAGTTTCAATGCCTTGACCAAGAAATACTTGTAACAACAACATATAAGACAAGGAAAGAATTGCATTATTATTTTAACTTCATTTTTTGTATGATGCTCTAAAATGGATGCATCATCNTATTTTTGATAAAATGAGAAAAAATGGATGCATCATTTTACACAGTCTGGAAAATTGTATTTCTACTATTGTGCTTCGTTCCTAGACATGGTTGTACACCAATGTAAATATTTGGCTAAAAAAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00090	306682	314129	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006413 translational initiation

cellular_component
GO:0005622 intracellular

molecular_function

GO:0003743 translation initiation factor activity

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000090s00011424.1	PF04760.10	IF2_N	311	359	6.50E-05
Glyur000090s00011424.1	PF00009.22	GTP_EFTU	391	545	4.60E-28
Glyur000090s00011424.1	PF03144.20	GTP_EFTU_D2	573	634	6.00E-08
Glyur000090s00011424.1	PF11987.3	IF-2	687	781	1.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.452
SRR1783600	control	4.552
SRR1783602	moderate drought stress	3.856
SRR1811619	moderate drought stress	3.704

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.029
DRR006520	Root Summer glycyrrhizin high producing strain	5.812
DRR006521	Root Winter glycyrrhizin high producing strain	8.467
DRR006522	Root Winter glycyrrhizin high producing strain	8.159
DRR006523	Root Summer glycyrrhizin low producing strain	7.508
DRR006524	Root Summer glycyrrhizin low producing strain	7.551
DRR006525	Leaf Summer glycyrrhizin high producing strain	119.396
DRR006526	Leaf Summer glycyrrhizin high producing strain	118.810

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.114
SRR2868004	Drought Stress (root)	18.850
SRR2967015	Control (root)	19.156

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	130.804
SRR9715740	Leaf	168.756
SRR9715741	Leaf	120.723
SRR9715739	Root	2.056
SRR9715742	Root	8.866
SRR9715743	Root	8.014

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.690
SRR8749028	MeJA induced 9h	25.369
SRR8749029	MeJA induced 9h	9.723
SRR8749030	Uninduced	12.468
SRR8749031	Uninduced	8.068
SRR8749032	Uninduced	5.517

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.898
SRR8400027	Control - Root	15.242