Gene detail

Gene detail information of Glyur000090s00011414

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79040.1	2.00E-31	photosystem II subunit R
NR	XP_008226285.1	6.30E-56	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Prunus mume]
Swissprot	tr\|P06183\|PSBR_SOLTU	5.00E-52	Photosystem II 10 kDa polypeptide, chloroplastic (Precursor)
trEMBL	tr\|M5WVP2\|M5WVP2_PRUPE	7.00E-56	Uncharacterized protein {ECO:0000313\|EMBL:EMJ13413.1}

Sequence

Transcript Sequence

>Glyur000090s00011414.1
TTTCCCTTCTTTTTGCTTTTTCATTAGCAATAGCTCACTTCNTTTTAAGTGAGTTATGCGAGTCATCCATTATATGCAATTAACATCGTTCACACATAAACGTGACATAATCAAAATATTTTTGTATTTTTCATCCATGTTATATCAAGACCTAACAACTATTCTATTAATTCTTTGGTGGATTCTAAAATAAGAACCTTNGAAAGTTTCTCGCCGGTGAGGGCCTAAAAATAGCCATAATTGTAGATCTATTAATAAACAATTTCAATCCACCTAATTCTTTTATGTCTAATATTGTTGTAGAATATGGAAGGTTTGAGACCAATTTTTTCTTCTTATTTTCTCCATGAACATTTTTTTTTTGTGGGGGAGGATAATTTCATAGAAGGAATATCCACGTTTGTTACATCTAGATGGGTATGAAAGATTTTGTTTGTTTGGATGTGTGCTCGGAAACAACAGGTGAAAATTTGATCTCATTTCAAGATAATGTTTTGCACTACCATATCCTACACTCTGCCACACATTGCATGCCACGTGGCACAAAAAAACATCACAAATCCTATGGTGACTATTAGTATTATTATGAGAGAGAGGAACATGTTTTGTTGCCCATAGTAAACAATCAGAAGCAGAGTAGTAGTANTAGTAGCAACCCACCAAGAGTGTTGAGTTGAAATGGCATCTTCAGTGATGGCNTCTTTGAGTCTCAAACCAGCACCTTTCACTGTTGAGAAATCTTCTTCAGTTAGAGGCCTTCCCTCCCTTGCAAGAACTTCTTCTTCCTTCAAAATTGTGGCCAGTGGTGGCAAGAAGATTAAGACTGACACCCCTTATGACAAATACGGTGCTAATGTTGATGGATACAGTCCTATCTACGACACCAAGGACTGGTCCCCAACCGGTGATGTCTACACTGGCGGTACAACTGGCTTGGCTATCTGGGCAGTAACACTACTTGGTCTTCTGGCTGGGGGTGCACTTCTTGTCTACAACACAAGCGCTCTGTCACAATAGACTCTGCTAAGTTGATATTTAAGTTGTATGTAACATTCCATGTAACTCTAAAAGTGAAGGATATATATTCCTCAAATACTTTGCGGACATGGTTCCTTCAGTTCTATAAATGTTGTGTGGATTTAAAGGAAATATTTTTGTTTGTATAACCATGCATCTTGGTGGGGTCTCCAAAACTTGTTTCTCAATATGTTAATCTCATGCATAGCTAAGTTGAATGCATTGCCATTGTCTCTTTTAATTTCATTGGTGTGGGGGTAACGNAACCTCCTCCAGTCAATAGTGGAATGTGGAGCATAGTGTTACACTTATTAGTTATTGGTCATTAGTGGAATGATTTAAAGATGCTAACTGTTTATAGTTTAATTTCTAACCATACGGGTACTTGGCTAGCCAAGGTGTTCTACAAAACACATACGCACTTCAAGAAATATTTCTTAAGCTATGTTGATTATCTAGGGCACACTTCCTTGCCTTAATTTGTGTTTCTATGATGAGGATTATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00090	245814	249188	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015979 photosynthesis

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0042651 thylakoid membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000090s00011414.1	PF04725.7	PsbR	48	112	3.70E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.523
SRR1783600	control	11.330
SRR1783602	moderate drought stress	24.651
SRR1811619	moderate drought stress	24.613

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.679
DRR006520	Root Summer glycyrrhizin high producing strain	26.509
DRR006521	Root Winter glycyrrhizin high producing strain	40.532
DRR006522	Root Winter glycyrrhizin high producing strain	39.953
DRR006523	Root Summer glycyrrhizin low producing strain	27.251
DRR006524	Root Summer glycyrrhizin low producing strain	28.661
DRR006525	Leaf Summer glycyrrhizin high producing strain	1078.995
DRR006526	Leaf Summer glycyrrhizin high producing strain	1073.924

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	78.064
SRR2868004	Drought Stress (root)	104.428
SRR2967015	Control (root)	64.073

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1545.644
SRR9715740	Leaf	1772.001
SRR9715741	Leaf	1345.629
SRR9715739	Root	51.074
SRR9715742	Root	46.398
SRR9715743	Root	50.322

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	57.101
SRR8749028	MeJA induced 9h	66.588
SRR8749029	MeJA induced 9h	55.631
SRR8749030	Uninduced	54.486
SRR8749031	Uninduced	9.407
SRR8749032	Uninduced	62.902

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	62.385
SRR8400027	Control - Root	74.816