Gene detail information of Glyur000090s00011408.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G56010.2 | 1.00E-19 | NAC domain containing protein 1 |
| NR | XP_003595973.1 | 2.07E-74 | NAC domain protein [Medicago truncatula] |
| Swissprot | tr|Q84TE6|NAC22_ARATH | 4.00E-27 | NAC domain-containing protein 21/22 |
| trEMBL | tr|F6KIF1|F6KIF1_MEDTR | 8.00E-75 | NAC1 {ECO:0000313|EMBL:AEE99077.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00090 | 186350 | 191097 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000090s00011408.1 | PF02365.10 | NAM | 11 | 56 | 9.90E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.163 |
| SRR1783600 | control | 8.846 |
| SRR1783602 | moderate drought stress | 16.640 |
| SRR1811619 | moderate drought stress | 16.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.471 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.460 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.640 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.414 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.023 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.102 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.737 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 142.216 |
| SRR2868004 | Drought Stress (root) | 101.482 |
| SRR2967015 | Control (root) | 106.828 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.729 |
| SRR9715740 | Leaf | 18.179 |
| SRR9715741 | Leaf | 19.870 |
| SRR9715739 | Root | 0.215 |
| SRR9715742 | Root | 0.323 |
| SRR9715743 | Root | 0.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.377 |
| SRR8749028 | MeJA induced 9h | 61.775 |
| SRR8749029 | MeJA induced 9h | 10.420 |
| SRR8749030 | Uninduced | 39.788 |
| SRR8749031 | Uninduced | 21.707 |
| SRR8749032 | Uninduced | 7.185 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 32.880 |
| SRR8400027 | Control - Root | 21.594 |