Gene detail

Gene detail information of Glyur000090s00011404

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35335.1	4.00E-12	Nucleotide-sugar transporter family protein
NR	XP_003545539.1	3.52E-17	PREDICTED: CMP-sialic acid transporter 4-like [Glycine max]
Swissprot	tr\|F4JN00\|CSTR4_ARATH	1.00E-13	CMP-sialic acid transporter 4
trEMBL	tr\|I1M629\|I1M629_SOYBN	1.00E-17	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G00290.2}

Sequence

Transcript Sequence

>Glyur000090s00011404.1
TTGATTCCGGCAACCATCTTCCCCGGCAACACAGGCTCCGTCATCCACGCAATCCCGCATCTGCGTTCATCCCCCTTCTACGATATCTCCCTCCACTGTTCCGTAAGACGTCGAAGTCCGACTGTTGCCTACAGTTTCGGTGCTGCGGTCGACACCGTCATGCGAGGAATCTGTCTTGGTCTCATGGAGCAGGAGGATTTCGCTTCTGCAACTTCGTTAAGTGAGATTCAGTGGGCTGCTTTTGTTCTACTCAGTGCTGGATGCACTACAGCCCAGTTGAATTCAATTTCCGATCGCGATCTTCAAACTCCCTTTCAAGGTTGGGTGATGGCAATCGTGAGTTGCTAACATTTTTATGGTGCTCTCACATTAGAAACATAAAGTAGTAAAGTCTAAATTTATGGTTTGAAAATGATCATGATGAGCTTTTCCTTTTCAAATCATGGCTCTCTTGAGTGGCTTTGCAGGTGTATATACCGAGGTAATTTTAATTGAGAGCAGTTACATTAATCTCAAATGATCTACCACCACTAGATATGATTCATGATAAGAGATTATGGCGTCTTTTGAATTTTGATGTATGTAGCAGACCAATCTTAATGAAAAAGGGTTTTGGTGGTTGTACATTAATCCCCTCAAGGTTTCATAAATTGACACTCCACTCCAATCTACAGTTGAAATTGTACTTTGAACTGTTGACTTCTTTGACTGATGGAATGTGTTAAATTTGGATAGAATATTATGCTTAAAATCTCTTTACAATTCGAACCCTTTACATATCAAGTTCAAATTATTTAATCTGTTTATCTGAATTTATTAATGCTTGAACAAAATTTGATTAGTCGACAGATATACCAGTCTGCTTAGAGTGTATTACTATAATGTTGAGNACGATTTCTTAGCAATCTATCGTGGCTTAGTTTTTTTTTTAGAAAAAAAAAATAGCAGGCTATTATTAAAAAGTGTCCTTCACTTCTGGTTGTATATNTTTGGCATGGGCATCAATGCTGTTGCAATATATATTGAGATTTTGAGACTTCACAATGGAGAGTTTACTAAAATAAATTTATATTCTACACGTATTCTACAGGGCAGGTGGCATTGACTACAATTAATTTATAATGGTCAAGTAATTTTGCCTGAAGCTTTGCACACGAGGCCTTGTGTACCAAAACTGGTTCTTGGTAGTTTACTGGTGCGGATGGAATTTTGGTAACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00090	154366	156075	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008643 carbohydrate transport

cellular_component

GO:0000139 Golgi membrane

GO:0016021 integral component of membrane

molecular_function
GO:0005351 sugar:proton symporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.519
SRR1783600	control	0.389
SRR1783602	moderate drought stress	0.503
SRR1811619	moderate drought stress	0.551

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.570
DRR006520	Root Summer glycyrrhizin high producing strain	1.492
DRR006521	Root Winter glycyrrhizin high producing strain	1.045
DRR006522	Root Winter glycyrrhizin high producing strain	0.913
DRR006523	Root Summer glycyrrhizin low producing strain	0.806
DRR006524	Root Summer glycyrrhizin low producing strain	0.807
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.336
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.328

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.523
SRR2868004	Drought Stress (root)	2.604
SRR2967015	Control (root)	4.044

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.520
SRR9715740	Leaf	1.420
SRR9715741	Leaf	1.696
SRR9715739	Root	0.683
SRR9715742	Root	1.916
SRR9715743	Root	1.770

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.697
SRR8749028	MeJA induced 9h	2.090
SRR8749029	MeJA induced 9h	1.014
SRR8749030	Uninduced	2.554
SRR8749031	Uninduced	1.112
SRR8749032	Uninduced	1.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.331
SRR8400027	Control - Root	3.108