Gene detail information of Glyur000090s00011399 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79080.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004488838.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|A3KPF8|PP131_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g79080, chloroplastic (Precursor) |
| trEMBL | tr|I1KU50|I1KU50_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G18360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00090 | 116174 | 117898 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000090s00011399.1 | PF12854.2 | PPR_1 | 134 | 166 | 3.50E-07 |
| Glyur000090s00011399.1 | PF13041.1 | PPR_2 | 173 | 220 | 4.40E-13 |
| Glyur000090s00011399.1 | PF13041.1 | PPR_2 | 245 | 290 | 3.20E-15 |
| Glyur000090s00011399.1 | PF12854.2 | PPR_1 | 311 | 341 | 3.50E-07 |
| Glyur000090s00011399.1 | PF13812.1 | PPR_3 | 350 | 377 | 0.019 |
| Glyur000090s00011399.1 | PF13041.1 | PPR_2 | 421 | 465 | 3.80E-11 |
| Glyur000090s00011399.1 | PF13041.1 | PPR_2 | 491 | 533 | 2.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.855 |
| SRR1783600 | control | 0.859 |
| SRR1783602 | moderate drought stress | 0.911 |
| SRR1811619 | moderate drought stress | 0.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.392 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.470 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.528 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.321 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.342 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.223 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.580 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.339 |
| SRR2868004 | Drought Stress (root) | 0.941 |
| SRR2967015 | Control (root) | 1.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.952 |
| SRR9715740 | Leaf | 16.019 |
| SRR9715741 | Leaf | 8.630 |
| SRR9715739 | Root | 0.863 |
| SRR9715742 | Root | 1.753 |
| SRR9715743 | Root | 2.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.507 |
| SRR8749028 | MeJA induced 9h | 6.743 |
| SRR8749029 | MeJA induced 9h | 4.739 |
| SRR8749030 | Uninduced | 2.163 |
| SRR8749031 | Uninduced | 1.543 |
| SRR8749032 | Uninduced | 2.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.508 |
| SRR8400027 | Control - Root | 2.203 |