Gene detail information of Glyur000090s00011396 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17860.1 | 9.00E-70 | Pathogenesis-related thaumatin superfamily protein |
| NR | KHN27742.1 | 7.81E-121 | Thaumatin-like protein 1 [Glycine soja] |
| Swissprot | tr|O80327|TLP1_PYRPY | 1.00E-107 | Thaumatin-like protein 1 (Precursor) |
| trEMBL | tr|I1MJ61|I1MJ61_SOYBN | 2.00E-122 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G40610.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00090 | 108619 | 109329 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000090s00011396.1 | PF00314.12 | Thaumatin | 15 | 236 | 5.50E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.288 |
| SRR1783600 | control | 14.933 |
| SRR1783602 | moderate drought stress | 6.084 |
| SRR1811619 | moderate drought stress | 6.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.420 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.270 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.903 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.449 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 59.509 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 60.807 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.423 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.801 |
| SRR2868004 | Drought Stress (root) | 11.953 |
| SRR2967015 | Control (root) | 12.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.455 |
| SRR9715740 | Leaf | 0.578 |
| SRR9715741 | Leaf | 0.583 |
| SRR9715739 | Root | 2.638 |
| SRR9715742 | Root | 17.540 |
| SRR9715743 | Root | 15.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.400 |
| SRR8749028 | MeJA induced 9h | 0.518 |
| SRR8749029 | MeJA induced 9h | 0.257 |
| SRR8749030 | Uninduced | 0.161 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.622 |
| SRR8400027 | Control - Root | 12.768 |