Gene detail

Gene detail information of Glyur000090s00011389

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16610.1	6.00E-45	arginine/serine-rich 45
NR	XP_002513413.1	1.94E-112	ribonucleic acid binding protein S1, putative [Ricinus communis]
COG	YP_005061084.1	3.00E-08	RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha str. Grapes]
Swissprot	tr\|Q9SEE9\|SR45_ARATH	3.00E-64	Serine/arginine-rich splicing factor SR45
trEMBL	tr\|B9RI44\|B9RI44_RICCO	7.00E-113	Ribonucleic acid binding protein S1, putative {ECO:0000313\|EMBL:EEF48816.1}

Sequence

Transcript Sequence

>Glyur000090s00011389.1
GTTCTTCTTCTTATCTCGGATTCGCTCCAAAAATTCTAACACTATTCAGTATTCACTTCACTACTACTCCAGCTAGGGTTTATCGAGGGTTCCATTCTCTCACTCTCTCTCTCTCTGTGTAACAATGGCGAAGCCTGGGCGAGGTCGTCGCTCACCACCGTCGGGTTCAATTTCGGGCTCGTCCTCTCGCTCCTCATCACCCTCCTCTTCTCGCTCTCGCTCCTCTCGCTCCAGATCCTTCTCTTCCTCTTCCTCCTCTCCCTCCCGCAGCCGCAGCCGGAGCCCTCCTCCTCAGAGACGGAAAAGTCCTGCTGAACCAGCAAGGAGAGGTCGATCTCCTCCTCCTCAGGCTAAGAGAACTTCTCCTCCCCCAAGGAAACCTTCCCCTGTACGTGAATCACTTGTTCTGCATGTAGAAAAGCTCAGCAGGAATGTTAATGAAGGCCATTTGAAAGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCGATGGATCGAACTGTTAATCTTCCAAAAGGATATGGATATGTGCAATTCAAGACAAGAGGGGATGCTGAAAAGGCATTATTATACATGGATGGTGCCCAAATAGATGGCAACGTTGTTAAGGCAAGATTTACTCTACCTCCAAGGCAGAAAGTTTCACCACCCCCTAAGGCTTCTGCTGTTGCTCCAAAGAGAGAGGCCCCTAGGACTGATAATGCTGGTGTAGATGTTGAAAAAGATGGGCCAAAACCTCCTCGGAGAAAACCTCCTCCCTCACCACGAAGGAGGTCTCCTGTGCCTCGAAGAGCTGGATCTCCGAGACGACCAGATTCTCCTCGCCGTCATGCAGATTCTCCTGTCCGTCGTCGGTTAGATTCTCCTTATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCCATGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGGCGCCTCAGATCACCTGCAAGGGTCTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGTAGACGTTCTCCTCCTCCTCCTCCTCGTCGCCGCTCACCACCACCTAGACGAGCTCGTAGTCCTCCTAGAAGATCTCCAATCAGCCGTAGGCGCAGTCGCTCTCCAATACGTAGGCCTGCACGCTCACGCTCAAGATCATTCTCACCTCGCAGAGGTCGACCACCGGTGAGACGTGGGAGGTCATCATCCTACTCTGATTCACCAAGTCCACGCAAGGTATCCCGGAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGCTCACCACCCCCAGCTCGCAAACCATAGATAATTCCTGTANATCTGTTGACTCTGTTGATATATTTATCAAGATTCTGTACCAGCTACTAGACGTTATTCTAGCTGTAATGTGTTTCGGGGTATTTGTTGCGTTTTATGATTGTCAGACATTCTCTTAACATGTTTTCAAATTAGCGCTTAAAATAGTTTGGGAAACTCAGTTCCATTATTTTGCCTTTGGGTTCGACTTTAGCTTTGTTGTTTTGCTCTGAAATGAAATGCAAGATTTGGGAGATGATGGGTGTTTTTAGCTCCTCGCATCCAGCAGTTAGAATCGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00090	57667	64032	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000090s00011389.1	PF00076.17	RRM_1	97	165	1.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	138.986
SRR1783600	control	140.483
SRR1783602	moderate drought stress	125.348
SRR1811619	moderate drought stress	125.631

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	96.645
DRR006520	Root Summer glycyrrhizin high producing strain	95.962
DRR006521	Root Winter glycyrrhizin high producing strain	83.144
DRR006522	Root Winter glycyrrhizin high producing strain	81.764
DRR006523	Root Summer glycyrrhizin low producing strain	88.453
DRR006524	Root Summer glycyrrhizin low producing strain	87.766
DRR006525	Leaf Summer glycyrrhizin high producing strain	52.678
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.948

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.740
SRR2868004	Drought Stress (root)	53.862
SRR2967015	Control (root)	57.939

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.075
SRR9715740	Leaf	39.389
SRR9715741	Leaf	38.915
SRR9715739	Root	57.738
SRR9715742	Root	68.735
SRR9715743	Root	61.147

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	119.307
SRR8749028	MeJA induced 9h	85.155
SRR8749029	MeJA induced 9h	93.540
SRR8749030	Uninduced	22.125
SRR8749031	Uninduced	6.662
SRR8749032	Uninduced	16.260

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	66.667
SRR8400027	Control - Root	62.933